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View Structure Prediction Details

Protein: gi|61359316, gi|...
Organism: synthetic construct
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61359316, gi|....

Description E-value Query
Range
Subject
Range
gi|73995965 - gi|73995965|ref|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiaris]
8.0E-65 [1..218] [85..302]
gi|49333437 - gi|49333437|gb|AAT64057.1| claudin 3c [Takifugu rubripes]
2.0E-61 [3..218] [2..216]
CLD5_MOUSE - Claudin-5 OS=Mus musculus GN=Cldn5 PE=1 SV=2
9.0E-61 [1..218] [1..218]
CLD5_RAT - Claudin-5 OS=Rattus norvegicus GN=Cldn5 PE=1 SV=2
9.0E-61 [1..218] [1..218]
gi|50924892, gi|... - gi|50924892|gb|AAH79722.1| MGC82990 protein [Xenopus laevis], gi|148227415|ref|NP_001087400.1| MGC82...
1.0E-60 [3..218] [2..213]
gi|54020932, gi|... - gi|54020932|ref|NP_001005709.1| claudin 3 [Xenopus (Silurana) tropicalis], gi|49523224|gb|AAH75291.1...
3.0E-60 [3..218] [2..213]
CLD5_BOVIN - Claudin-5 OS=Bos taurus GN=CLDN5 PE=2 SV=1
1.0E-59 [1..218] [1..218]
gi|114685094 - gi|114685094|ref|XP_530408.2| PREDICTED: claudin 5 [Pan troglodytes]
2.0E-59 [1..218] [1..219]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAALEILG LVLCLVGWGG LILACGLPMW QVTAFLDHNI VTAQTTWKGL WMSCVVQSTG  60
   61 HMQCKVYDSV LALSTEVQAA RALTVSAVLL AFVALFVTLA GAQCTTCVAP GPAKARVALT 120
  121 GGVLYLFCGL LALVPLCWFA NIVVREFYDP SVPVSQKYEL GAALYIGWAA TALLMVGGCL 180
  181 LCCGAWVCTG RPDLSFPVKY SAPRRPTATG DYDKKNYV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.585027
Match: PF00822.11
Description: No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle