YRC Public Data Repository - Protein Structure Prediction

Protein:	DAD1_BOVIN
Organism:	Bos taurus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAD1_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|73962567 - gi\|73962567\|ref\|XP_537361.2\| PREDICTED: similar to defender against cell death 1 [Canis familiaris]	165.0	[0..1]	[113..1]
DAD1_MESAU - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus ... gi\|114652018 - gi\|114652018\|ref\|XP_509838.2\| PREDICTED: similar to DAD-1 [Pan troglodytes] ENSCJAT00000016915 - null gi\|61363160, gi\|... - gi\|61363160\|gb\|AAX42345.1\| defender against cell death 1 [synthetic construct], gi\|60819691\|gb\|AAX36... gi\|149756188 - gi\|149756188\|ref\|XP_001500228.1\| PREDICTED: similar to defender against cell death 1 [Equus caballus... ENSOCUP000000122... - pep:novel chromosome:oryCun2:17:42840686:42870057:-1 gene:ENSOCUG00000014269 transcript:ENSOCUT00000... tr\|G3HRC5\|G3HRC5... - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Cricetulus griseus GN... tr\|M3X9E1\|M3X9E1... - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Felis catus GN=DAD1 P... DAD1 - defender against cell death 1 DAD1_RAT - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=... CCDS9571.1_1 - null gi\|109082853 - gi\|109082853\|ref\|XP_001099561.1\| PREDICTED: similar to defender against cell death 1 [Macaca mulatta... DAD1_MOUSE - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 ...	164.0	[0..1]	[113..1]
DAD1_PIG - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE...	164.0	[0..1]	[113..1]
gi\|1905979 - gi\|1905979\|gb\|AAC53098.1\| oligosaccharyltransferase subunit homolog [Mus musculus]	164.0	[0..1]	[113..1]
gi\|60652889, gi\|... - gi\|60831017\|gb\|AAX36954.1\| defender against cell death 1 [synthetic construct], gi\|60654189\|gb\|AAX29...	164.0	[0..1]	[113..1]
gi\|47228101 - gi\|47228101\|emb\|CAF97730.1\| unnamed protein product [Tetraodon nigroviridis]	162.0	[0..1]	[113..1]
DAD1_PONPY - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 - Pongo pygmaeus (Orangu... DAD1_PONAB - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pongo abelii GN=DAD1 ...	162.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASVLSVIS RFLEEYLSAT PQRLKLLDAY LLYILLTGAL QFGYCLLVGT FPFNSFLSGF  60
   61 ISCVGSFILA VCLRIQINPQ NKADFQGISP ERAFADFLFA STILHLVVMN FVG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.420216
Match:	PF02109.7
Description:	No description for PF02109.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.970	0.029	membrane	a.7.8	GAT domain

Predicted functions:

Term	Confidence	Notes
binding	2.1864622614427	bayes_pls_golite062009
protein binding	1.31719506183815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: