YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19075968
Organism:	Schizosaccharomyces pombe 972h-
Length:	305 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19075968.

Description	E-value	Query Range	Subject Range
BUD13_RAT - BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=1 SV=1	243.0	[0..13]	[305..334]
BUD13_MOUSE - BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1	237.0	[0..13]	[305..335]
gi\|114640436 - gi\|114640436\|ref\|XP_001152604.1\| PREDICTED: BUD13 homolog isoform 2 [Pan troglodytes]	235.0	[0..13]	[305..316]
BUD13 - BUD13 homolog (S. cerevisiae) gi\|123984687, gi... - gi\|123998686\|gb\|ABM86992.1\| BUD13 homolog (yeast) [synthetic construct], gi\|123984687\|gb\|ABM83689.1\|...	235.0	[0..13]	[305..316]
gi\|76635262 - gi\|76635262\|ref\|XP_881764.1\| PREDICTED: similar to CG13625-PA isoform 2 [Bos taurus]	232.0	[0..13]	[305..331]
gi\|73954731 - gi\|73954731\|ref\|XP_850329.1\| PREDICTED: similar to CG13625-PA isoform 2 [Canis familiaris]	230.0	[0..13]	[305..321]

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Predicted Domain #1

Region A:
Residues: [1-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSAHMSNAD YIAKKYLRKD QGKKKKKKEK DFVEIQDEDV AGWDDDNSFS LVNRELTSLH  60
   61 DAPTIVANES LKDRDIDAIY QNIEKTTNKP AQLWKAVGND EVVESEQQDS HDAESIPQFG 120
  121 LLTGKQVTFK AEERRKREEK SSNLDEEELR KSRETVYRDA TGRRIDLVLA RKEAKRKLKE 180
  181 KEEEARRQKE QQQGVVQVRQ QKEYLKELER QKTVPLARYE DDPEYNKELK ERSRWNDPAA 240
  241 SFLTNKPVSS KATYQGYAPP NRFNIRPGHR WDGIIRGNGF ENKWFQRQNE RKAQEHEAHM 300
  301 WAIEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits