YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655261
Organism:	synthetic construct
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655261.

Description	E-value	Query Range	Subject Range
gi\|15928669, gi\|... - gi\|31542416\|ref\|NP_031782.2\| complexin 1 [Mus musculus], gi\|15928669\|gb\|AAH14803.1\| Complexin 1 [Mus...	157.0	[0..1]	[134..1]
CPLX1_RAT - Complexin-1 OS=Rattus norvegicus GN=Cplx1 PE=1 SV=1 CPLX1_MOUSE - Complexin-1 OS=Mus musculus GN=Cplx1 PE=1 SV=1	153.0	[0..1]	[134..1]
gi\|30584359, gi\|... - gi\|61372290\|gb\|AAX43818.1\| complexin 1 [synthetic construct], gi\|61372285\|gb\|AAX43817.1\| complexin 1...	153.0	[0..1]	[134..1]
gi\|363738978\|ref... - PREDICTED: complexin-2-like [Gallus gallus] CPLX2 - complexin 2 tr\|M3WND1\|M3WND1... - Complexin 2 OS=Felis catus GN=CPLX2 PE=4 SV=1 gi\|109079818 - gi\|109079818\|ref\|XP_001083046.1\| PREDICTED: complexin 2 [Macaca mulatta] gi\|73954019 - gi\|73954019\|ref\|XP_546223.2\| PREDICTED: similar to complexin 2 [Canis familiaris] gi\|197128165 - gi\|197128165\|gb\|ACH44663.1\| putative complexin 2 variant [Taeniopygia guttata] CPLX2_MOUSE - Complexin-2 OS=Mus musculus GN=Cplx2 PE=1 SV=1 CPLX2_RAT - Complexin-2 OS=Rattus norvegicus GN=Cplx2 PE=1 SV=1 CPLX2_BOVIN - Complexin-2 OS=Bos taurus GN=CPLX2 PE=1 SV=1 gi\|126290948 - gi\|126290948\|ref\|XP_001370865.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|149726060 - gi\|149726060\|ref\|XP_001502792.1\| PREDICTED: similar to Complexin-2 (Complexin II) (CPX II) (Synaphin... gi\|182888019 - gi\|182888019\|gb\|AAI60304.1\| Complexin 2 [synthetic construct]	151.0	[0..1]	[134..1]
gi\|55926107, gi\|... - gi\|55926107\|ref\|NP_001007496.1\| cplx2 protein [Xenopus (Silurana) tropicalis], gi\|51258162\|gb\|AAH799...	150.0	[0..1]	[134..1]
CPLX1_BOVIN - Complexin-1 OS=Bos taurus GN=CPLX1 PE=2 SV=1	150.0	[0..1]	[134..1]
gi\|108995263 - gi\|108995263\|ref\|XP_001094482.1\| PREDICTED: similar to complexin 1 isoform 3 [Macaca mulatta] CPLX1_MACFA - Complexin-1 OS=Macaca fascicularis GN=CPLX1 PE=2 SV=1	149.0	[0..1]	[134..1]
gi\|37590711, gi\|... - gi\|37590711\|gb\|AAH59299.1\| MGC68923 protein [Xenopus laevis], gi\|162139014\|ref\|NP_001080000.1\| hypot...	148.0	[0..1]	[134..1]
gi\|50761882 - gi\|50761882\|ref\|XP_424869.1\| PREDICTED: similar to synaphin 2 [Gallus gallus]	148.0	[0..1]	[134..1]
CPLX2_NARJA - Complexin-2 OS=Narke japonica PE=1 SV=1	148.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFVMKQALG GATKDMGKML GGDEEKDPDA AKKEEERQEA LRQAEEERKA KYAKMEAERE  60
   61 AVRQGIRDKY GIKKKEEREA EAQAAMEANS EGSLTRPKKA IPPGCGDEVE EEDESILDTV 120
  121 IKYLPGPLQD MLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	91.853872
Match:	PF05835.3
Description:	No description for PF05835.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits