YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149027294, gi...
Organism:	Rattus norvegicus
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149027294, gi....

Description	E-value	Query Range	Subject Range
gi\|220944844, gi... - gi\|220954760\|gb\|ACL89923.1\| l(2)s5379-PA [synthetic construct], gi\|220944844\|gb\|ACL84965.1\| l(2)s537... l(2)s5379-PA, l(... - The gene lethal (2) s5379 is referred to in FlyBase by the symbol Dmel\l(2)s5379 (CG7085, FBgn001070...	423.0	[0..6]	[298..2]
GOLPH3 - golgi phosphoprotein 3 (coat-protein) gi\|55624518 - gi\|55624518\|ref\|XP_517830.1\| PREDICTED: golgi phosphoprotein 3 isoform 2 [Pan troglodytes]	422.0	[0..1]	[298..1]
GOLP3_RAT - Golgi phosphoprotein 3 OS=Rattus norvegicus GN=Golph3 PE=1 SV=1	416.0	[0..1]	[298..1]
gi\|197246951, gi... - gi\|63100626\|gb\|AAH95205.1\| Golph3 protein [Danio rerio], gi\|197246951\|gb\|AAI64056.1\| Golph3 protein ...	408.0	[0..1]	[298..1]
gi\|109016095, gi... - gi\|109016095\|ref\|XP_001102928.1\| PREDICTED: similar to GPP34-related protein isoform 3 [Macaca mulat... CCDS966.1_1 - null gi\|90078452 - gi\|90078452\|dbj\|BAE88906.1\| unnamed protein product [Macaca fascicularis]	408.0	[0..1]	[298..1]
GLP3L_MOUSE - Golgi phosphoprotein 3-like OS=Mus musculus GN=Golph3l PE=1 SV=1	406.0	[0..26]	[298..12]
gi\|31197197, gi\|... - gi\|31197197\|ref\|XP_307546.1\| Anopheles gambiae str. PEST AGAP012632-PA [Anopheles gambiae str. PEST]... AGAP012632-PA, A... - golgi phosphoprotein 3\|protein_coding\|UNKN:19369809:19371967:-1\|gene:AGAP012606, Golgi phosphoprotei...	404.0	[0..6]	[298..2]
GLP3L_BOVIN - Golgi phosphoprotein 3-like OS=Bos taurus GN=GOLPH3L PE=2 SV=1	399.0	[0..1]	[298..1]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLTQRSSG LVQRRTEASR NAADKERAAG GGGGSGEDEA QSRRDEQDDD DKGDSKETRL  60
   61 TLMEEVLLLG LKDREGYTSF WNDCISSGLR GCMLIELALR GRLQLEACGM RRKSLLTRKV 120
  121 ICKSDAPTGD VLLDEALKHV KETQPPETVQ NWIELLSGET WNPLKLHYQL RNVRERLAKN 180
  181 LVEKGVLTTE KQNFLLFDMT THPLTNNNIK QRLIKKVQEA VLDKW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNDPHRMDKR LLALIYLAHA SDVLENAFAP LLDEQYDLAT KRVRQLLDLD PEVECLKANT  60
   61 NEVLWAVVAA FTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.439	0.052	Golgi apparatus	a.4.1	Homeodomain-like
View	Download	0.492	0.042	membrane	a.77.1	DEATH domain
View	Download	0.430	0.009	Golgi apparatus	a.65.1	Annexin
View	Download	0.697	N/A	N/A	a.112.1	Description not found.
View	Download	0.426	N/A	N/A	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits