YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123983348, gi...
Organism:	synthetic construct
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123983348, gi....

Description	E-value	Query Range	Subject Range
FXYD7_MOUSE - FXYD domain-containing ion transport regulator 7 OS=Mus musculus GN=Fxyd7 PE=3 SV=1	8.0E-25	[1..80]	[1..80]
FXYD3_RAT - FXYD domain-containing ion transport regulator 3 OS=Rattus norvegicus GN=Fxyd3 PE=3 SV=1	2.0E-24	[4..76]	[16..83]
gi\|60826210 - gi\|60826210\|gb\|AAX36749.1\| FXYD domain containing ion transport regulator 7 [synthetic construct]	2.0E-24	[1..80]	[1..80]
gi\|109124339 - gi\|109124339\|ref\|XP_001093807.1\| PREDICTED: similar to FXYD domain-containing ion transport regulato...	2.0E-23	[4..76]	[16..83]
gi\|73955090 - gi\|73955090\|ref\|XP_853482.1\| PREDICTED: similar to FXYD domain-containing ion transport regulator 6 ...	4.0E-23	[1..69]	[12..79]
FXYD3_PIG - FXYD domain-containing ion transport regulator 3 OS=Sus scrofa GN=FXYD3 PE=3 SV=1	5.0E-23	[1..76]	[12..83]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPTQTPTK APEEPDPFYY DYNTVQTVGM TLATILFLLG ILIVISKKVK CRKADSRSES  60
   61 PTCKSCKSEL PSSAPGGGGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits