YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85675313, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	828 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85675313, gi|....

Description	E-value	Query Range	Subject Range
gi\|75238000, gi\|... - gi\|75238000\|ref\|ZP_00722005.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	820.0	[0..1]	[828..1]
NAPA_ECOL5 - Periplasmic nitrate reductase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=napA PE=3 SV=1 gi\|190909429, gi... - gi\|75243022\|ref\|ZP_00726728.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOSM - Periplasmic nitrate reductase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=napA PE=3 SV=1	820.0	[0..1]	[828..1]
NAPA_ECO45 - Periplasmic nitrate reductase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=napA PE=3 SV=1 NAPA_ECOK1 - Periplasmic nitrate reductase OS=Escherichia coli O1:K1 / APEC GN=napA PE=3 SV=1 NAPA_ECOUT - Periplasmic nitrate reductase OS=Escherichia coli (strain UTI89 / UPEC) GN=napA PE=3 SV=1 gi\|226901045, gi... - gi\|237704679\|ref\|ZP_04535160.1\| periplasmic nitrate reductase [Escherichia sp. 3_2_53FAA], gi\|226901...	820.0	[0..1]	[828..1]
gi\|24052644, gi\|... - gi\|24113592\|ref\|NP_708102.1\| nitrate reductase [Shigella flexneri 2a str. 301], gi\|24052644\|gb\|AAN43... gi\|30063646, gi\|... - gi\|30063646\|ref\|NP_837817.1\| nitrate reductase [Shigella flexneri 2a str. 2457T], gi\|30041899\|gb\|AAP... NAPA_SHIFL - Periplasmic nitrate reductase OS=Shigella flexneri GN=napA PE=3 SV=1	820.0	[0..1]	[828..1]
gi\|124501846, gi... - gi\|124526375\|ref\|ZP_01698328.1\| periplasmic nitrate reductase, large subunit [Escherichia coli B], g... NAPA_ECOL6 - Periplasmic nitrate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=napA... NAPA_ECOLC - Periplasmic nitrate reductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=napA PE=... gi\|75259678, gi\|... - gi\|75259678\|ref\|ZP_00730980.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... gi\|188488009, gi... - gi\|75514430\|ref\|ZP_00736708.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOHS - Periplasmic nitrate reductase OS=Escherichia coli O9:H4 (strain HS) GN=napA PE=3 SV=1 gi\|75231456, gi\|... - gi\|75231456\|ref\|ZP_00717825.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOSE - Periplasmic nitrate reductase OS=Escherichia coli (strain SE11) GN=napA PE=3 SV=1 NAPA_ECOLU - Periplasmic nitrate reductase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=napA PE=3 S... NAPA_SHISS - Periplasmic nitrate reductase OS=Shigella sonnei (strain Ss046) GN=napA PE=3 SV=1 NAPA_ESCF3 - Periplasmic nitrate reductase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73... gi\|83588190, gi\|... - gi\|83588190\|ref\|ZP_00926815.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... gi\|227887263, gi... - gi\|227887263\|ref\|ZP_04005068.1\| nitrate reductase [Escherichia coli 83972], gi\|227835613\|gb\|EEJ46079... NAPA_ECOL6 - Periplasmic nitrate reductase OS=Escherichia coli O6 GN=napA PE=3 SV=1	820.0	[0..1]	[828..1]
gi\|13362564, gi\|... - gi\|15832349\|ref\|NP_311122.1\| nitrate reductase catalytic subunit [Escherichia coli O157:H7 str. Saka... gi\|209765718, gi... - pir\|\|G91015 probable nitrate reductase 3 [imported] - Escherichia coli (strain O157:H7, substrain R... NAPA_ECO57 - Periplasmic nitrate reductase OS=Escherichia coli O157:H7 GN=napA PE=3 SV=3 gi\|217327224, gi... - gi\|217327224\|ref\|ZP_03443307.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... gi\|195935586 - gi\|195935586\|ref\|ZP_03080968.1\| nitrate reductase [Escherichia coli O157:H7 str. EC4024] gi\|254794105, gi... - gi\|254794105\|ref\|YP_003078942.1\| nitrate reductase, periplasmic, large subunit [Escherichia coli O15... gi\|208808943, gi... - gi\|208808943\|ref\|ZP_03251280.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... gi\|208814595, gi... - gi\|208814595\|ref\|ZP_03255924.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... NAPA_ECO5E - Periplasmic nitrate reductase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=napA PE=3 SV=1 gi\|187771029, gi... - gi\|187771029\|gb\|EDU34873.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|189001996, gi... - gi\|189001996\|gb\|EDU70982.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168787115, gi... - gi\|189372957\|gb\|EDU91373.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168802421, gi... - gi\|189375593\|gb\|EDU94009.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168749612, gi... - gi\|188016081\|gb\|EDU54203.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168754956, gi... - gi\|189357701\|gb\|EDU76120.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168764701, gi... - gi\|189365355\|gb\|EDU83771.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|189362982, gi... - gi\|189362982\|gb\|EDU81401.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s...	820.0	[0..1]	[828..1]
gi\|75211622, gi\|... - gi\|75211622\|ref\|ZP_00711701.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	818.0	[0..1]	[828..1]
NAPA_SHIF8 - Periplasmic nitrate reductase OS=Shigella flexneri serotype 5b (strain 8401) GN=napA PE=3 SV=1	818.0	[0..1]	[828..1]
gi\|25284135 - pir\|\|A85860 probable nitrate reductase 3 napA [imported] - Escherichia coli (strain O157:H7, substra... gi\|15802759, gi\|... - gi\|15802759\|ref\|NP_288786.1\| nitrate reductase [Escherichia coli O157:H7 EDL933], gi\|12516538\|gb\|AAG...	818.0	[0..1]	[828..1]
NAPA_ECO24 - Periplasmic nitrate reductase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=napA PE=3 SV=1	818.0	[0..1]	[828..1]

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Predicted Domain #1

Region A:
Residues: [1-828]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSRRSFMK ANAVAAAAAA AGLSVPGVAR AVVGQQEAIK WDKAPCRFCG TGCGVLVGTQ  60
   61 QGRVVACQGD PDAPVNRGLN CIKGYFLPKI MYGKDRLTQP LLRMKNGKYD KEGEFTPITW 120
  121 DQAFDVMEEK FKTALKEKGP ESIGMFGSGQ WTIWEGYAAS KLFKAGFRSN NIDPNARHCM 180
  181 ASAVVGFMRT FGMDEPMGCY DDIEQADAFV LWGANMAEMH PILWSRITNR RLSNQNVTVA 240
  241 VLSTYQHRSF ELADNGIIFT PQSDLVILNY IANYIIQNNA INQDFFSKHV NLRKGATDIG 300
  301 YGLRPTHPLE KAAKNPGSDA SEPMSFEDYK AFVAEYTLEK TAEMTGVPKD QLEQLAQLYA 360
  361 DPNKKVISYW TMGFNQHTRG VWANNLVYNL HLLTGKISQP GCGPFSLTGQ PSACGTAREV 420
  421 GTFAHRLPAD MVVTNEKHRD ICEKKWNIPS GTIPAKIGLH AVAQDRALKD GKLNVYWTMC 480
  481 TNNMQAGPNI NEERMPGWRD PRNFIIVSDP YPTVSALAAD LILPTAMWVE KEGAYGNAER 540
  541 RTQFWRQQVQ APGEAKSDLW QLVQFSRRFK TEEVWPEDLL AKKPELRGKT LYEVLYATPE 600
  601 VSKFPVSELA EDQLNDESRE LGFYLQKGLF EEYAWFGRGH GHDLAPFDDY HKARGLRWPV 660
  661 VNGKETQWRY SEGNDPYVKA GEGYKFYGKP DGKAVIFALP FEPAAEAPDE EYDLWLSTGR 720
  721 VLEHWHTGSM TRRVPELHRA FPEAVLFIHP LDAKARDLRR GDKVKVVSRR GEVISIVETR 780
  781 GRNRPPQGLV YMPFFDAAQL VNKLTLDATD PLSKETDFKK CAVKLEKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nyaA
Description:	No description for 2nyaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits