YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61361934, gi\|...
Organism:	synthetic construct
Length:	459 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61361934, gi|....

Description	E-value	Query Range	Subject Range
ZPR1_MOUSE - Zinc finger protein ZPR1 OS=Mus musculus GN=Zpr1 PE=1 SV=1	0.0	[1..459]	[1..459]
gi\|109483400, gi... - gi\|109484620\|ref\|XP_001064960.1\| PREDICTED: similar to Zinc-finger protein ZPR1 (Zinc finger protein...	0.0	[1..459]	[1..459]
gi\|30585157, gi\|... - gi\|60653799\|gb\|AAX29593.1\| zinc finger protein 259 [synthetic construct], gi\|30585157\|gb\|AAP36851.1\|...	0.0	[1..459]	[1..459]
gi\|114640440 - gi\|114640440\|ref\|XP_001152978.1\| PREDICTED: zinc finger protein 259 isoform 3 [Pan troglodytes]	0.0	[1..459]	[1..459]
ZPR1_BOVIN - Zinc finger protein ZPR1 OS=Bos taurus GN=ZNF259 PE=2 SV=1	0.0	[1..459]	[1..459]
gi\|73954727 - gi\|73954727\|ref\|XP_850312.1\| PREDICTED: similar to zinc finger protein 259 isoform 2 [Canis familiar...	0.0	[1..459]	[1..460]

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Predicted Domain #1

Region A:
Residues: [1-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGAVEPG PPGAAVAPSP APAPPPAPDH LFRPISAEDE EQQPTEIESL CMNCYCNGMT  60
   61 RLLLTKIPFF REIIVSSFSC EHCGWNNTEI QSAGRIQDQG VRYTLSVRAL EDMNREVVKT 120
  121 DSAATRIPEL DFEIPAFSQK GALTTVEGLI TRAISGLEQD QPARRANKDA TAERIDEFIV 180
  181 KLKELKQVAS PFTLIIDDPS GNSFVENPHA PQKDDALVIT HYNRTRQQEE MLGLQEEAPA 240
  241 EKPEEEDLRN EVLQFSTNCP ECNAPAQTNM KLVQIPHFKE VIIMATNCEN CGHRTNEVKS 300
  301 GGAVEPLGTR ITLHITDASD MTRDLLKSET CSVEIPELEF ELGMAVLGGK FTTLEGLLKD 360
  361 IRELVTKNPF TLGDSSNPGQ TERLQEFSQK MDQIIEGNMK AHFIMDDPAG NSYLQNVYAP 420
  421 EDDPEMKVER YKRTFDQNEE LGLNDMKTEG YEAGLAPQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	168.0
Match:	2qkdA
Description:	No description for 2qkdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits