YRC Public Data Repository - Protein Structure Prediction

Protein:	TMHS_RAT
Organism:	Rattus norvegicus
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMHS_RAT.

Description	E-value	Query Range	Subject Range
gi\|76650028 - gi\|76650028\|ref\|XP_606243.2\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Bos taurus]	322.0	[0..1]	[217..1]
gi\|73972668 - gi\|73972668\|ref\|XP_538882.2\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Canis familia...	315.0	[0..1]	[216..1]
LHFPL5 - lipoma HMGIC fusion partner-like 5 gi\|123980610, gi... - gi\|123995431\|gb\|ABM85317.1\| lipoma HMGIC fusion partner-like 5 [synthetic construct], gi\|123980610\|g... CCDS4812.1_1 - null	308.0	[0..1]	[219..1]
gi\|114615290 - gi\|114615290\|ref\|XP_527854.2\| PREDICTED: similar to Lipoma HMGIC fusion partner-like 3 protein [Pan ...	308.0	[0..4]	[218..13]
gi\|109472966, gi... - gi\|109472966\|ref\|XP_001062080.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 3 [Rattus no...	308.0	[0..4]	[218..12]
gi\|124486999, gi... - gi\|94374333\|ref\|XP_485569.4\| PREDICTED: lipoma HMGIC fusion partner-like 3 isoform 1 [Mus musculus],...	307.0	[0..4]	[218..1]
TMHS_CHICK - Tetraspan membrane protein of hair cell stereocilia homolog OS=Gallus gallus GN=LHFPL5 PE=2 SV=1	306.0	[0..1]	[218..1]
gi\|109070878 - gi\|109070878\|ref\|XP_001112357.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 5 [Macaca mu...	304.0	[0..1]	[216..1]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLLPAQEA AKIYHTNYVR NSRAVGVMWG TLTICFSVLV MALFIQPYWI GDSVSTPQAG  60
   61 YFGLFSYCVG NVLSSELICK GGPLDFSSIP SRAFKTAMFF VALAMFLIIG SIICFSLFFV 120
  121 CNTATVYKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CAWMQLAAAT GLMIGCLVYP DGWDSSEVRR MCGEQTGKYT LGHCTIRWAF MLAILSIGDA  60
   61 LILSFLAFVL GYRQDKLLPD DYKADGNEEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits