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View Structure Prediction Details

Protein: gi|115440855, gi...
Organism: Oryza sativa Japonica Group
Length: 366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115440855, gi....

Description E-value Query
Range
Subject
Range
gi|92898011 - gi|92898011|gb|ABE94015.1| 2OG-Fe(II) oxygenase [Medicago truncatula]
341.0 [0..1] [360..1]

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Predicted Domain #1
Region A:
Residues: [1-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADCMQEWPE PVVRVQALAD SGLEAIPRCY VKPPCDRPAP EADDASSGAS IPVVDLGNGG  60
   61 DDEGGQLAEA VAAACRGWGF FQVVNHGVRP ELMRAAREAW HGFFRLPLQE KQKYANSPRT 120
  121 YEGYGSRLGV EKGAILDWGD YYFLVLSPDA AKSPAKYWPA NPGICKEVSE EYGREVIKLC 180
  181 ERLMRLLSAS LGLDETRFQE AFGGADCGAG LRANYYPRCP QPDLTLGLSA HSDPGILTVL 240
  241 LADDHVRGLQ VRRRDGHWVT VQPLPDAFIV NVGDQIEILS NSMYKSVEHR VIVNAEEERI 300
  301 SLALFYNPRG DVPVAPAPEL VTPERPSLYY RPMTFDEYRV YVRKNGPKGK AQLEALKGQS 360
  361 ITQNNE

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Detection Method: PSI-BLAST
Confidence: 84.69897
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.921320409505 bayes_pls_golite062009
binding 0.588242505102319 bayes_pls_golite062009
nucleic acid binding 0.0678642854814351 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle