YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115440083, gi...
Organism: Oryza sativa Japonica Group
Length: 619 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115440083, gi....

Description E-value Query
Range
Subject
Range
gi|20804673, gi|... - gi|50902016|ref|XP_463441.1| P0512C01.13 [Oryza sativa (japonica cultivar-group)], dbj|BAB92361.1| P...
455.0 [0..244] [619..159]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKEQQGGG GPPPPPRAPV PAASSQPPIK KLVRQLDFTS AALAGNPAMA AAAAAVSRAL  60
   61 QPRAVPVGFP QPQQLRAHLP VGVPQQLHPR GLPVMRSHHV VHVPLPRPAV AVAVPVPQVR 120
  121 PAQPQPVPRP PVAVPLKPES PKPPRARLYE GKDGTPTKKK CCNCKHSKCL KLYCECFASG 180
  181 VYCDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNCSNCFNNV KNETARREAI DATLERNPDA FRPKIGSSPH ANRNNMEAAG DLPLVGKHNK  60
   61 GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE RKALFQGDHK NSIHMQQAAN 120
  121 AAVNGAIGAA AFSSPSASRK RKHIDPSLDH SAKENGAHRT NHVPQKNGMP SDGPLPINQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [365-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVHPPTLGPF KVTYRPLLAD IVQPGDVKEL CKLLVVVSGN AAKAYAGKKS QDKVVEKEDE  60
   61 MGGKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [430-619]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGEIGGSLAS TNHDREENNN DPNNQKASAD DPSTGGTRAG KASLEESKHD CNDDQKSNRP  60
   61 MSPGTLALMC DEQDTMFMTS QNVVPQQPAP VNQNQSELYA EQERCVLTEF RDCLHKLVTF 120
  121 GRMKEEKFSM AIKSEVPAHP MQANGVSRIP YSKEVDVPVV KTFLQSSSRH PAAGNSATGH 180
  181 LDKKPKHENT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle