YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79326408
Organism:	Arabidopsis thaliana
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79326408.

Description	E-value	Query Range	Subject Range
gi\|18420069, gi\|... - gi\|222423035\|dbj\|BAH19500.1\| AT4G37550 [Arabidopsis thaliana], gi\|18420069\|ref\|NP_568028.1\| formamid...	473.0	[0..1]	[382..1]
gi\|115440133, gi... - gi\|115440133\|ref\|NP_001044346.1\| Os01g0764900 [Oryza sativa (japonica cultivar-group)], gi\|113533877...	458.0	[0..1]	[382..17]
gi\|86607057 - gi\|86607057\|ref\|YP_475820.1\| acetamidase/formamidase family protein [Cyanobacteria bacterium Yellows... gi\|86607057, gi\|... - gi\|86607057\|ref\|YP_475820.1\| acetamidase/formamidase family protein [Synechococcus sp. JA-3-3Ab], gi...	433.0	[0..6]	[382..2]
gi\|87301709, gi\|... - gi\|87301709\|ref\|ZP_01084549.1\| formamidase [Synechococcus sp. WH 5701], gi\|87283926\|gb\|EAQ75880.1\| f...	431.0	[0..6]	[382..15]
gi\|90415644\|ref\|... - formamidase [marine gamma proteobacterium HTCC2207] gi\|90415644, gi\|... - gi\|90415644\|ref\|ZP_01223578.1\| formamidase [marine gamma proteobacterium HTCC2207], gi\|90332967\|gb\|E...	429.0	[0..7]	[381..3]
gi\|91778402, gi\|... - gi\|91778402\|ref\|YP_553610.1\| formamidase (FmdA) [Burkholderia xenovorans LB400], gi\|91691062\|gb\|ABE3...	428.0	[0..7]	[381..3]
gi\|115423337, gi... - gi\|187478751\|ref\|YP_786775.1\| formamidase [Bordetella avium 197N], gi\|115423337\|emb\|CAJ49871.1\| form...	426.0	[0..6]	[381..2]

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Predicted Domain #1

Region A:
Residues: [1-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLSPRVVV KVDLKKKPWQ QDQPLHNRWH PEIPPVAEVK AGEFFRVEMI DAMGGVIKDN  60
   61 DSASDIKNLV LTTTHHLSGP IRVVDEEGVA AKAGDLLAVE ICNLGPLPGD EWGFTGSFDR 120
  121 ENGGGFLTDH FPCATKAIWY FEGIYAYSPQ IPGVRFPGLT HPGVIGTAPS NELLRIWNDR 180
  181 ERQLEESGVE SLTLCEVVHQ RPLACLPTTK GCLLGNIEEG TPEWERIANE AARTIPGREN 240
  241 GGNCDIKNLS RGSKIYLPVF VEGANLSTGD MHFSQGDGEI SFCGAIEMSG FLELKCEIIR 300
  301 NGMQEYLTPM GPTPLHVNPI FEIGPVEPRF SEWLVFEGIS VDESGKQHYL DATVAYKRAV 360
  361 LNAIDYLFKF GYSKEQVLVF AA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	3b9tA
Description:	No description for 3b9tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits