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View Structure Prediction Details

Protein: SKP_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 165 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKP_PHOLL.

Description E-value Query
Range
Subject
Range
gi|21960048, gi|... - gi|22127002|ref|NP_670425.1| periplasmic chaperone [Yersinia pestis KIM], gi|21960048|gb|AAM86676.1|...
gi|45437430, gi|... - gi|45442565|ref|NP_994104.1| periplasmic chaperone [Yersinia pestis biovar Microtus str. 91001], gi|...
130.0 [0..2] [165..33]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLCAASF GIALAFSVGA QAADKIAVVN VGEIFQQLPA REAVVKQLEN EFKNRASELQ  60
   61 RMETDLQSKI QKLQRDGSTM KSSERTNLEK EVMAKREEFA KKAQAFEQDH RRREMEERNK 120
  121 ILSRIQDAIK VVAGKEGYDV VIDANAVAYS VSGKNITTSV LKQVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.09691
Match: 1sg2A
Description: Crystal structure of the periplasmic chaperone Skp
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.90264670077178 bayes_pls_golite062009
unfolded protein binding 1.7887148828099 bayes_pls_golite062009
protein binding 0.404450175883241 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle