| Protein: | AI2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 854 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AI2.
| Description | E-value | Query Range |
Subject Range |
|
|
723.0 | [0..267] | [787..1] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MVQRWLYSTN AKDIAVLYFM LAIFSGMAGT AMSLIIRLEL AAPGSQYLHG NSQLFNVLVV 60
61 GHAVLMIFCA PFRLIYHCIE VLIDKHISVY SINENFTVSF WFWLLVVTYM VFRYVNHMAY 120
121 PVGANSTGTM ACHKSAGVKQ PAQGKNCPMA RLTNSCKECL GFSLTPSHLG IVIHAYVLEE 180
181 EVHELTKNES LALSKSWHLE GCTSSNGKLR NTGLSERGNP GDNGVFMVPK FNLNKVRYFS 240
241 TLSKLNARKE DSLAYLTKI
|
| Detection Method: |  |
| Confidence: | 89.522879 |
| Match: | 1occA |
| Description: | Mitochondrial cytochrome c oxidase, subunit I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [260-707] |
1 11 21 31 41 51
| | | | | |
1 NTTDFSELNK LMENNHNKTE TINTRILKLM SDIRMLLIAY NKIKSKKGNM SKGSNNITLD 60
61 GINISYLNKL SKDINTNMFK FSPVRRVEIP KTSGGFRPLS VGNPREKIVQ ESMRMMLEII 120
121 YNNSFSYYSH GFRPNLSCLT AIIQCKNYMQ YCNWFIKVDL NKCFDTIPHN MLINVLNERI 180
181 KDKGFMDLLY KLLRAGYVDK NNNYHNTTLG IPQGSVVSPI LCNIFLDKLD KYLENKFENE 240
241 FNTGNMSNRG RNPIYNSLSS KIYRCKLLSE KLKLIRLRDH YQRNMGSDKS FKRAYFVRYA 300
301 DDIIIGVMGS HNDCKNILND INNFLKENLG MSINMDKSVI KHSKEGVSFL GYDVKVTPWE 360
361 KRPYRMIKKG DNFIRVRHHT SLVVNAPIRS IVMKLNKHGY CSHGILGKPR GVGRLIHEEM 420
421 KTILMHYLAV GRGIMNYYRL ATNFTTLR
|
| Detection Method: | |
| Confidence: | 2.24 |
| Match: | 1xr7A |
| Description: | Crystal structure of RNA-dependent RNA Polymerase 3D from human rhinovirus serotype 16 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA polymerase activity | 3.48899522091554 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 3.47530593895491 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.44935357223617 | bayes_pls_golite062009 |
| DNA binding | 1.04980164056055 | bayes_pls_golite062009 |
| catalytic activity | 0.985794797454925 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.977829931092877 | bayes_pls_golite062009 |
| nucleic acid binding | 0.916757424850137 | bayes_pls_golite062009 |
| binding | 0.826541132106647 | bayes_pls_golite062009 |
| transferase activity | 0.562916058192021 | bayes_pls_golite062009 |
| exonuclease activity | 0.478231141372817 | bayes_pls_golite062009 |
|
Region A: Residues: [708-854] |
1 11 21 31 41 51
| | | | | |
1 GRITYILFYS CCLTLARKFK LNTVKKVILK FGKVLVDPHS KVSFSIDDFK IRHKMNMTDS 60
61 NYTPDEILDR YKYMLPRSLS LFSGICQICG SKHDLEVHHV RTLNNAANKI KDDYLLGRMI 120
121 KMNRKQITIC KTCHFKVHQG KYNGPGL
|
| Detection Method: | |
| Confidence: | 10.638272 |
| Match: | PF01348.12 |
| Description: | No description for PF01348.12 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
