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View Structure Prediction Details

Protein: SCEI
Organism: Saccharomyces cerevisiae
Length: 235 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCEI.

Description E-value Query
Range
Subject
Range
gi|138754325 - gi|138754325|emb|CAL59730.1| I-SceI meganuclease [Cloning vector pSC101BADgbaA-ISceI(amp)]
gi|5802283 - gi|5802283|gb|AAD51638.1|AF170481_1 I-SceI meganuclease [Cloning vector pUC19RP12]
gi|5802286 - gi|5802286|gb|AAD51640.1|AF170482_1 I-SceI meganuclease [Cloning vector pST76A-SceP]
gi|5802291 - gi|5802291|gb|AAD51644.1|AF170483_2 I-SceI meganuclease [Cloning vector pST98-AS]
276.0 [0..5] [235..3]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIKKNQVM NLGPNSKLLK EYKSQLIELN IEQFEAGIGL ILGDAYIRSR DEGKTYCMQF  60
   61 EWKNKAYMDH VCLLYDQWVL SPPHKKERVN HLGNLVITWG AQTFKHQAFN KLANLFIVNN 120
  121 KKTIPNNLVE NYLTPMSLAY WFMDDGGKWD YNKNSTNKSI VLNTQSFTFE EVEYLVKGLR 180
  181 NKFQLNCYVK INKNKPIIYI DSMSYLIFYN LIKPYLIPQM MYKLPNTISS ETFLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 1r7mA
Description: The homing endonuclease I-SceI bound to its DNA recognition region
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle