YRC Public Data Repository - Protein Structure Prediction

Protein:	TCM62
Organism:	Saccharomyces cerevisiae
Length:	573 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCM62.

Description	E-value	Query Range	Subject Range
CH65_RHIME, CH60... - (P35471) 60 kDa chaperonin 5 (Protein Cpn60 5) (groEL protein 5), 60 kDa chaperonin 5 OS=Rhizobium m... CH605_RHIME - 60 kDa chaperonin 5 OS=Rhizobium meliloti (strain 1021) GN=groL5 PE=2 SV=2	0.0	[23..571]	[2..533]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[23..571]	[2..533]
CH602_RHILO - 60 kDa chaperonin 2 OS=Rhizobium loti (strain MAFF303099) GN=groL2 PE=3 SV=1 CH62_RHILO, CH60... - (Q98IH9) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2), 60 kDa chaperonin 2 OS=Rhizobium l...	0.0	[23..572]	[2..536]
CH601_RHOSH - 60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4 CH601_RHOS4 - 60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=... gi\|221638732, gi... - gi\|221638732\|ref\|YP_002524994.1\| 60 kDa chaperonin 1 [Rhodobacter sphaeroides KD131], gi\|221159513\|g...	0.0	[23..570]	[2..532]
CH60_NEIMF - 60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 1546... gi\|11277961 - pir\|\|H81964 chaperonin 60kD subunit NMA0473 [imported] - Neisseria meningitidis (strain Z2491 serogr... CH60_NEIMA - 60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1 CH60_NEIMA - 60 kDa chaperonin OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=groL PE=3 SV...	0.0	[23..571]	[2..532]
CH60_RHOS5 - 60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1 CH60_RHOPL - 60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1	0.0	[23..571]	[2..533]
gi\|229369449, gi... - gi\|229606794\|ref\|YP_002877442.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae MJ-12... gi\|229527411, gi... - gi\|229527411\|ref\|ZP_04416803.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae 12129(... gi\|229524642, gi... - gi\|229524642\|ref\|ZP_04414047.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae bv. al... gi\|197752612, gi... - gi\|254285855\|ref\|ZP_04960817.1\| chaperonin, 60 Kd subunit [Vibrio cholerae AM-19226], gi\|197752612\|r... gi\|229341322, gi... - gi\|229521728\|ref\|ZP_04411146.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae TM 110... gi\|229345976, gi... - gi\|229516913\|ref\|ZP_04406359.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae RC9], ... gi\|183179661, gi... - gi\|183179661\|ref\|ZP_02957872.1\| chaperonin, 60 Kd subunit [Vibrio cholerae MZO-3], gi\|183013072\|gb\|E... gi\|229349461, gi... - gi\|229513584\|ref\|ZP_04403048.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae TMA 21... gi\|148875067, gi... - gi\|153829484\|ref\|ZP_01982151.1\| chaperonin, 60 Kd subunit [Vibrio cholerae 623-39], gi\|148875067\|gb\|... gi\|229353263, gi... - gi\|229509789\|ref\|ZP_04399270.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae B33], ... gi\|229507288, gi... - gi\|229507288\|ref\|ZP_04396793.1\| heat shock protein 60 family chaperone GroEL [Vibrio cholerae BX 330... CH601_VIBCH, CH6... - (Q9KNR7) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1), 60 kDa chaperonin 1 OS=Vibrio chol... gi\|227082780, gi... - gi\|227082780\|ref\|YP_002811331.1\| chaperonin, 60 Kd subunit [Vibrio cholerae M66-2], gi\|227010668\|gb\|... gi\|254846904, gi... - gi\|75830079\|ref\|ZP_00759364.1\| COG0459: Chaperonin GroEL (HSP60 family) [Vibrio cholerae MO10], gi\|2... gi\|121727609, gi... - gi\|75816588\|ref\|ZP_00747054.1\| COG0459: Chaperonin GroEL (HSP60 family) [Vibrio cholerae V52], gi\|12... CH601_VIBCH - 60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=groL... gi\|121547246, gi... - gi\|121590924\|ref\|ZP_01678246.1\| chaperonin, 60 Kd subunit [Vibrio cholerae 2740-80], gi\|121547246\|gb... gi\|124115546, gi... - gi\|153213976\|ref\|ZP_01949169.1\| chaperonin, 60 Kd subunit [Vibrio cholerae 1587], gi\|124115546\|gb\|EA... gi\|153221018, gi... - gi\|153221018\|ref\|ZP_01952073.1\| chaperonin, 60 Kd subunit [Vibrio cholerae MAK 757], gi\|124119929\|gb... gi\|153819803, gi... - gi\|153819803\|ref\|ZP_01972470.1\| chaperonin, 60 Kd subunit [Vibrio cholerae NCTC 8457], gi\|126509664\|...	0.0	[23..572]	[2..533]
CH602_RHILE - 60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1	0.0	[23..567]	[2..529]
CH601_BRADU - 60 kDa chaperonin 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / US... CH601_BRAJA - 60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3	0.0	[23..571]	[2..533]
CH60_RAOPL - 60 kDa chaperonin (Fragment) OS=Raoultella planticola GN=groL PE=3 SV=1	0.0	[23..569]	[2..530]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNCLRKLG NHQTKCSVKT LHTPIYRTKN LQVLRDTLSG IKLLEKIITS SSYNKTLIYE  60
   61 PKYKSKPQVV SSHDTMRLHN VMRELLDSLQ VDEATNTRLQ SNRPRKLGRV GLQLFMDCIQ 120
  121 DNLTATSTSL TCSLLEHYFK YPEKEVTNGI KAGLRYIRDF LAKNKII

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [439-573]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAKGFIPGYG ISLLKAIPGL NELKANEPNF MTKVGINAVL SAVILPSEVA FKNAYGYNYY  60
   61 EINSLIAGAI NEKSFPMAKF SPNSEPVNTV KDGNLEPWSK MDSCLAGVET FIELLTSCNT 120
  121 IITCVYKSLN GTKPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	214.0
Match:	1iokA_
Description:	GroEL, E domain; GroEL, A domain; GroEL, I domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [168-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKSQNDVDAL VEQLTMSSSD SQSIKRVLKA INYELFSDDI VRVINGNKTY DEVDVSKGWK  60
   61 YPAGILDSNE AYLRSLELPT KKLVSIDKDM LVLMYDGTLR DANKILPTIT YARKLRKSVL 120
  121 LIVNGDCTGD ALTSVTINNN RNKRENNESR IVVLKYSKKA NNDLAPQENL DFIKFLRLPC 180
  181 GYDSIYSPEY SPLVPSKMCA DKYYGSIESI KATTGEAFLY NSIDAEAIPN KVPKSFLQNT 240
  241 VTLSIGGHNE IEIDRRRNAI DNCLNNVLCH G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	214.0
Match:	1iokA_
Description:	GroEL, E domain; GroEL, A domain; GroEL, I domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits