Protein: | PBP2 |
Organism: | Saccharomyces cerevisiae |
Length: | 413 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBP2.
Description | E-value | Query Range |
Subject Range |
|
262.0 | [0..15] | [399..129] |
|
259.0 | [0..15] | [399..243] |
|
257.0 | [0..66] | [402..13] |
|
256.0 | [0..66] | [402..13] |
|
255.0 | [0..15] | [399..41] |
|
254.0 | [0..15] | [399..93] |
Region A: Residues: [1-143] |
1 11 21 31 41 51 | | | | | | 1 MSTETTKPSI TTTPTTVLVS PNTLKRKKGE DTSEEQLEAE IKRVALKDAD SHSDNDHDSP 60 61 DNVPSDVHLR MLCLVKHASL IVGHKGATIS RIKSETSARI NISNNIRGVP ERIVYVRGTC 120 121 DDVAKAYGMI VRALLEEHGN EDN |
Detection Method: | |
Confidence: | 41.37734 |
Match: | 1j4wA |
Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [144-243] |
1 11 21 31 41 51 | | | | | | 1 GEDIEISINL LIPHHLMGCI IGKRGSRLRE IEDLSAAKLF ASPNQLLLSN DRILTINGVP 60 61 DAIHIATFYI SQTLLNFQME SPQKNVKRSI YYQPTQFNSV |
Detection Method: | |
Confidence: | 41.37734 |
Match: | 1j4wA |
Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [244-322] |
1 11 21 31 41 51 | | | | | | 1 LIDHSQPNTI FHQRNHQYHP SDKLLSYKPN KNLPISSTLL SMATPQYTTA SVANATAFQP 60 61 NFVIPNVTVL DGPVISPAP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [323-413] |
1 11 21 31 41 51 | | | | | | 1 GNHLLMNFVQ QEIFIDEKFV GNVIGKDGKH INSVKESTGC SIIIQDPVEG SSERRLTIRG 60 61 TFMASQAAIM LISNKIEIDR SNAERKRRSP L |
Detection Method: | |
Confidence: | 75.69897 |
Match: | 1j5kA |
Description: | HnRNP K, KH3 |
Matching Structure (courtesy of the PDB): |