YRC Public Data Repository - Protein Structure Prediction

Protein:	YCL002C
Organism:	Saccharomyces cerevisiae
Length:	152 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL002C.

Description	E-value	Query Range	Subject Range
gi\|1870132 - gi\|1870132\|emb\|CAB06797.1\| unknown [Saccharomyces pastorianus]	1.0E-55	[2..140]	[1..139]
YCL002C - Putative protein of unknown function; YCL002C is not an essential gene	3.0E-45	[1..120]	[1..120]
gi\|50285493, gi\|... - gi\|50285493\|ref\|XP_445175.1\| unnamed protein product [Candida glabrata], gi\|49524478\|emb\|CAG58075.1\|...	104.0	[0..2]	[150..60]
gi\|50302881, gi\|... - gi\|50302881\|ref\|XP_451378.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640509\|emb\|CAH0296...	101.0	[0..1]	[140..96]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVLRQLYYY RSTKHIYQGI SITSIIIISV FLVLGIFTYG CSISNLPLKN SGKFGVFYLE  60
   61 HINYLWVMAN LLKCFKYVPQ MSINWMGCST VGLSSKFALI SFLAESIDLL GRLVIPTNAL 120
  121 FYEIPFNSTP FWVKLIQFVT YWSYFVKFSM FT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits