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View Structure Prediction Details

Protein: CLB3
Organism: Saccharomyces cerevisiae
Length: 427 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLB3.

Description E-value Query
Range		 Subject
Range
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1
 0.0 [8..425] [5..425]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1
gi|123990181 - gi|123990181|gb|ABM83901.1| cyclin B1 [synthetic construct]
 0.0 [8..425] [5..429]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
 0.0 [11..425] [3..452]
gi|254022 - gi|254022|gb|AAB22970.1| cyclin B1 [Mus sp.]
CCNB1_MOUSE - G2/mitotic-specific cyclin-B1 OS=Mus musculus GN=Ccnb1 PE=1 SV=3
 0.0 [8..425] [5..426]
CGB1_CRILO - (Q08301) G2/mitotic-specific cyclin B1
CCNB1_CRIGR - G2/mitotic-specific cyclin-B1 OS=Cricetulus griseus GN=CCNB1 PE=2 SV=1
 0.0 [8..425] [5..425]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [18..418] [3..413]
gi|151941848 - gi|151941848|gb|EDN60204.1| B-type cyclin [Saccharomyces cerevisiae YJM789]
CLB3 - B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; m...
CG23_YEAST - G2/mitotic-specific cyclin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLB3 PE=1 S...
 0.0 [1..427] [1..427]
gi|7271222 - gi|7271222|emb|CAB81558.1| cyclin B1 [Nicotiana tabacum]
 0.0 [18..418] [3..413]
CCNB1_RAT - G2/mitotic-specific cyclin-B1 OS=Rattus norvegicus GN=Ccnb1 PE=2 SV=1
 0.0 [8..425] [5..419]

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Predicted Domain #1
Region A:
Residues: [1-162] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHNSQSLSS GHIRSPEDEN VAPIGNLKHR TGSLSHISSA HPRVALSDVT NIVATNSSNN  60
   61 SISKPKVAPI KERLDSAAII EEERLDANSV AQRKEADHND LLTDREQEEP VEDDGESEED 120
  121 EEEDQEPLLL QHYASDTLVW EHAFRTYYRT TLDPNDDDVY DV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-178] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMVAELSNEI FEYMRK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [301-427] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMSFLRRISK ADDYEHDTRT LAKYLLESTI MDHRLVSAQP SWLAAGAYFL SKIILGQNQW  60
   61 SLAHVYYSNY TQEQILPLAT IILENCRYAS KRHNAIWRKY SSRRYLHSSQ IVAKWIALAE 120
  121 HRVERSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 375.512579
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [179-300] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEDLYKPNPY YMDKQPELRW SFRSTLIDWI VQVHEKFQLL PETLYLCINI IDRYLCKEVV  60
   61 PVNKFQLVGA ASLFIAAKYE EINCPTIKDF VYMSENCYSR NDLLDAERTI LNGLEFELGW 120
  121 PG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 375.512579
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle