| Protein: | DLD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 587 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLD1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..587] | [1..587] |
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|
0.0 | [5..575] | [13..567] |
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0.0 | [49..577] | [58..563] |
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0.0 | [88..576] | [6..475] |
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0.0 | [107..574] | [2..458] |
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|
0.0 | [112..581] | [8..464] |
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0.0 | [107..576] | [16..471] |
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0.0 | [107..581] | [3..464] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MLWKRTCTRL IKPIAQPRGR LVRRSCYRYA STGTGSTDSS SQWLKYSVIA SSATLFGYLF 60
61 AKNLYSRETK EDLIEKLEMV KKIDPVNSTL KLSSLDSPDY
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | a.47.2 | t-snare proteins |
| View | Download | 0.635 | a.7.8 | GAT domain |
| View | Download | 0.628 | a.126.1 | Serum albumin-like |
| View | Download | 0.600 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.775 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.598 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.577 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.564 | a.7.8 | GAT domain |
| View | Download | 0.553 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.536 | a.118.1 | ARM repeat |
| View | Download | 0.535 | a.24.3 | Cytochromes |
| View | Download | 0.523 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.519 | a.24.4 | Hemerythrin |
| View | Download | 0.507 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.501 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.490 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.480 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.422 | a.74.1 | Cyclin-like |
| View | Download | 0.421 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.417 | a.118.1 | ARM repeat |
| View | Download | 0.417 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.408 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.398 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.397 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.377 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.363 | a.24.3 | Cytochromes |
| View | Download | 0.362 | a.29.2 | Bromodomain |
| View | Download | 0.358 | a.28.1 | ACP-like |
| View | Download | 0.347 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.343 | a.74.1 | Cyclin-like |
| View | Download | 0.334 | a.1.1 | Globin-like |
| View | Download | 0.332 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.329 | a.47.2 | t-snare proteins |
| View | Download | 0.323 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.317 | a.24.3 | Cytochromes |
| View | Download | 0.316 | a.7.8 | GAT domain |
| View | Download | 0.316 | a.7.8 | GAT domain |
| View | Download | 0.300 | a.22.1 | Histone-fold |
| View | Download | 0.293 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.292 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.292 | a.47.2 | t-snare proteins |
| View | Download | 0.291 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.277 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.277 | a.7.7 | BAG domain |
| View | Download | 0.274 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.272 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.271 | a.7.1 | Spectrin repeat |
| View | Download | 0.262 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.258 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.257 | a.46.1 | Methionine synthase domain |
| View | Download | 0.257 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.257 | a.24.3 | Cytochromes |
| View | Download | 0.254 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.253 | d.82.2 | Frataxin-like |
| View | Download | 0.252 | a.134.1 | Fungal elicitin |
| View | Download | 0.252 | a.30.1 | ROP protein |
| View | Download | 0.248 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.248 | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.247 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.242 | a.47.2 | t-snare proteins |
| View | Download | 0.242 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.241 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.240 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.237 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.237 | a.1.1 | Globin-like |
| View | Download | 0.235 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.233 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.232 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.231 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.231 | a.1.1 | Globin-like |
| View | Download | 0.230 | a.1.1 | Globin-like |
| View | Download | 0.230 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.229 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.229 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.227 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.226 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.225 | a.7.7 | BAG domain |
| View | Download | 0.224 | a.7.1 | Spectrin repeat |
| View | Download | 0.224 | a.7.8 | GAT domain |
| View | Download | 0.224 | a.22.1 | Histone-fold |
| View | Download | 0.223 | a.46.1 | Methionine synthase domain |
| View | Download | 0.221 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.220 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.220 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.217 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.214 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.213 | a.23.2 | Diol dehydratase, gamma subunit |
| View | Download | 0.210 | a.2.3 | Chaperone J-domain |
| View | Download | 0.209 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.209 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.208 | a.47.2 | t-snare proteins |
| View | Download | 0.207 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.203 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.203 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.201 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.201 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.200 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
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Region A: Residues: [101-327] |
1 11 21 31 41 51
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1 LHDPVKIDKV VEDLKQVLGN KPENYSDAKS DLDAHSDTYF NTHHPSPEQR PRIILFPHTT 60
61 EEVSKILKIC HDNNMPVVPF SGGTSLEGHF LPTRIGDTIT VDLSKFMNNV VKFDKLDLDI 120
121 TVQAGLPWED LNDYLSDHGL MFGCDPGPGA QIGGCIANSC SGTNAYRYGT MKENIINMTI 180
181 VLPDGTIVKT KKRPRKSSAG YNLNGLFVGS EGTLGIVTEA TVKCHVK
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|
Region B: Residues: [535-587] |
1 11 21 31 41 51
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1 GVGIGKREYL LEELGEAPVD LMRKIKLAID PKRIMNPDKI FKTDPNEPAN DYR
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| Detection Method: | |
| Confidence: | 105.69897 |
| Match: | 1diiA_ |
| Description: | Flavoprotein subunit of p-cresol methylhydroxylase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [328-534] |
1 11 21 31 41 51
| | | | | |
1 PKAETVAVVS FDTIKDAAAC ASNLTQSGIH LNAMELLDEN MMKLINASES TDRCDWVEKP 60
61 TMFFKIGGRS PNIVNALVDE VKAVAQLNHC NSFQFAKDDD EKLELWEARK VALWSVLDAD 120
121 KSKDKSAKIW TTDVAVPVSQ FDKVIHETKK DMQASKLINA IVGHAGDGNF HAFIVYRTPE 180
181 EHETCSQLVD RMVKRALNAE GTCTGEH
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| Detection Method: | |
| Confidence: | 105.69897 |
| Match: | 1diiA_ |
| Description: | Flavoprotein subunit of p-cresol methylhydroxylase |
| Matching Structure (courtesy of the PDB): |
|
