YRC Public Data Repository - Protein Structure Prediction

Protein:	SDH4
Organism:	Saccharomyces cerevisiae
Length:	181 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDH4.

Description	E-value	Query Range	Subject Range
SHH4_YEAST - Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... YLR164W - Mitochondrial inner membrane of unknown function; similar to Tim18p and Sdh4p; expression induced by...	218.0	[0..21]	[169..13]
sdh4 - TIM22 inner membrane protein import complex anchor subunit Tim18 DHSD_SCHPO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyce...	207.0	[0..12]	[168..41]
gi\|47682403 - gi\|47682403\|gb\|AAH70307.1\| Succinate dehydrogenase complex, subunit D, integral membrane protein [Ho...	195.0	[0..10]	[167..14]
DHSD_BOVIN - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Bos taurus GN=SDHD...	193.0	[0..12]	[167..15]
gi\|58294180 - gi\|58294180\|gb\|AAW70030.1\| succinate dehydrogenase complex subunit D [Ovis aries]	191.0	[0..14]	[167..18]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLPRSMKFM TGRRIFHTAT VRAFQSTAKK SLTIPFLPVL PQKPGGVRGT PNDAYVPPPE  60
   61 NKLEGSYHWY MEKIFALSVV PLATTAMLTT GPLSTAADSF FSVMLLGYCY MEFNSCITDY 120
  121 ISERVYGVWH KYAMYMLGLG SAVSLFGIYK LETENDGVVG LVKSLWDSSE KDNSQKIEAK 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.154902
Match:	1zoyD
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits