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View Structure Prediction Details

Protein: SDH4
Organism: Saccharomyces cerevisiae
Length: 181 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDH4.

Description E-value Query
Range
Subject
Range
SHH4_YEAST - Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
YLR164W - Mitochondrial inner membrane of unknown function; similar to Tim18p and Sdh4p; expression induced by...
218.0 [0..21] [169..13]
sdh4 - TIM22 inner membrane protein import complex anchor subunit Tim18
DHSD_SCHPO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyce...
207.0 [0..12] [168..41]
gi|47682403 - gi|47682403|gb|AAH70307.1| Succinate dehydrogenase complex, subunit D, integral membrane protein [Ho...
195.0 [0..10] [167..14]
DHSD_BOVIN - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Bos taurus GN=SDHD...
193.0 [0..12] [167..15]
gi|58294180 - gi|58294180|gb|AAW70030.1| succinate dehydrogenase complex subunit D [Ovis aries]
191.0 [0..14] [167..18]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLPRSMKFM TGRRIFHTAT VRAFQSTAKK SLTIPFLPVL PQKPGGVRGT PNDAYVPPPE  60
   61 NKLEGSYHWY MEKIFALSVV PLATTAMLTT GPLSTAADSF FSVMLLGYCY MEFNSCITDY 120
  121 ISERVYGVWH KYAMYMLGLG SAVSLFGIYK LETENDGVVG LVKSLWDSSE KDNSQKIEAK 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.154902
Match: 1zoyD
Description: Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle