| Protein: | ZIP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 875 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZIP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [57..873] | [837..1664] |
|
|
0.0 | [24..874] | [18..879] |
|
|
0.0 | [1..873] | [774..1663] |
|
|
0.0 | [24..874] | [802..1663] |
|
|
0.0 | [58..873] | [841..1667] |
|
Region A: Residues: [1-321] |
1 11 21 31 41 51
| | | | | |
1 MSNFFRDSSM GFKPRPNIFA KLRVRDVDSD SSANTVVENS SNCLDVGSSI EGDDTFKKPH 60
61 KTSTEQELIT SMSLSQRNHG YSDDMEIGSP KKTTSTDQYN RILKNDVAAI ENDTDEDFEI 120
121 TEVREVSEGV AKETKESHGD PNDSETTLKD SKMHEYTMTN GKAPLHTSIN NSSTSSNDVL 180
181 LEAFTNTQRI CSNLKQELQK QQQDNAKLKV RLQSYASNSD KINEKVGKYK SCLETLQERI 240
241 ATLTSHKNNQ ETKLKDLRQN HQLYQRRISG FKTSIENLNK TINDLGKNKK EADAELMKKG 300
301 KEIEYLKREL DDCSGQLSEE K
|
| Detection Method: |  |
| Confidence: | 54.9897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [322-394] |
1 11 21 31 41 51
| | | | | |
1 IKNSSLIQEM GKNREEMIKS IENFFSEDKA HHLLQFNKFE ERVHDLFEKK LQKHFDVAKD 60
61 TLNVGLRNTT VEL
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [395-451] |
1 11 21 31 41 51
| | | | | |
1 SSNTETMLKQ QYEDIKENLE QKMSSSKDEM AKTINELSVT QKGLIMGVQE ELLTSSG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.665 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.566 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.700 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.566 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.563 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.548 | 0.939 | chromatin binding | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.544 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.543 | 0.939 | chromatin binding | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.523 | 0.939 | chromatin binding | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.496 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.496 | 0.939 | chromatin binding | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.477 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.477 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.463 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.461 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.455 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.451 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.447 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.431 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.428 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.427 | 0.939 | chromatin binding | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.420 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.410 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.408 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.406 | 0.939 | chromatin binding | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.403 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.400 | 0.939 | chromatin binding | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.396 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.395 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.395 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.389 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.388 | 0.939 | chromatin binding | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.385 | 0.939 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.382 | 0.939 | chromatin binding | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.382 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.379 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.376 | 0.939 | chromatin binding | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.366 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.361 | 0.939 | chromatin binding | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.351 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.351 | 0.939 | chromatin binding | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.347 | 0.939 | chromatin binding | a.159.2 | FF domain |
| View | Download | 0.344 | 0.939 | chromatin binding | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.336 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.333 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.332 | 0.939 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.328 | 0.939 | chromatin binding | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.327 | 0.939 | chromatin binding | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.324 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.318 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.315 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.315 | 0.939 | chromatin binding | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.314 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.312 | 0.939 | chromatin binding | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.306 | 0.939 | chromatin binding | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.306 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.299 | 0.939 | chromatin binding | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.297 | 0.939 | chromatin binding | a.159.2 | FF domain |
| View | Download | 0.295 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.284 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.283 | 0.939 | chromatin binding | a.60.2 | RuvA domain 2-like |
| View | Download | 0.283 | 0.939 | chromatin binding | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.283 | 0.939 | chromatin binding | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.282 | 0.939 | chromatin binding | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.282 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.282 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.281 | 0.939 | chromatin binding | a.144.1 | PABC (PABP) domain |
| View | Download | 0.279 | 0.939 | chromatin binding | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.279 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.276 | 0.939 | chromatin binding | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.276 | 0.939 | chromatin binding | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.273 | 0.939 | chromatin binding | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.272 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.271 | 0.939 | chromatin binding | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.266 | 0.939 | chromatin binding | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.266 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.265 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.255 | 0.939 | chromatin binding | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.255 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.251 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.247 | 0.939 | chromatin binding | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.245 | 0.939 | chromatin binding | g.34.1 | HIV-1 VPU cytoplasmic domain |
| View | Download | 0.243 | 0.939 | chromatin binding | a.60.2 | RuvA domain 2-like |
| View | Download | 0.243 | 0.939 | chromatin binding | d.120.1 | Cytochrome b5 |
| View | Download | 0.242 | 0.939 | chromatin binding | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.240 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.239 | 0.939 | chromatin binding | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.239 | 0.939 | chromatin binding | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.237 | 0.939 | chromatin binding | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.237 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.237 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.236 | 0.939 | chromatin binding | a.64.1 | Saposin |
| View | Download | 0.236 | 0.939 | chromatin binding | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.236 | 0.939 | chromatin binding | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.234 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.231 | 0.939 | chromatin binding | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.231 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.230 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.230 | 0.939 | chromatin binding | a.112.1 | Description not found. |
| View | Download | 0.229 | 0.939 | chromatin binding | a.112.1 | Description not found. |
| View | Download | 0.228 | 0.939 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.228 | 0.939 | chromatin binding | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.228 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.226 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.221 | 0.939 | chromatin binding | d.45.1 | ClpS-like |
| View | Download | 0.221 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.220 | 0.939 | chromatin binding | a.3.1 | Cytochrome c |
| View | Download | 0.219 | 0.939 | chromatin binding | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.219 | 0.939 | chromatin binding | a.60.1 | SAM/Pointed domain |
| View | Download | 0.219 | 0.939 | chromatin binding | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.215 | 0.939 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.213 | 0.939 | chromatin binding | a.112.1 | Description not found. |
| View | Download | 0.210 | 0.939 | chromatin binding | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.210 | 0.939 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.206 | 0.939 | chromatin binding | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.206 | 0.939 | chromatin binding | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.205 | 0.939 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | 0.939 | chromatin binding | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.204 | 0.939 | chromatin binding | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.201 | 0.939 | chromatin binding | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
|
Region A: Residues: [452-522] |
1 11 21 31 41 51
| | | | | |
1 NIQTALVSEM NNTRQELLDD ASQTAKNYAS LENLVKAYKA EIVQSNEYEE RIKHLESERS 60
61 TLSSQKNQII S
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.87991790206998 | bayes_pls_golite062009 |
| transcription regulator activity | 2.27581597876942 | bayes_pls_golite062009 |
| DNA binding | 2.18852662086781 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.16596178759795 | bayes_pls_golite062009 |
| nucleic acid binding | 2.16095038479122 | bayes_pls_golite062009 |
| chromatin binding | 1.68308196781423 | bayes_pls_golite062009 |
| transcription factor activity | 1.62455239044226 | bayes_pls_golite062009 |
| transcription factor binding | 1.23930219500076 | bayes_pls_golite062009 |
| centromeric DNA binding | 1.13545283098583 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.09150919349912 | bayes_pls_golite062009 |
| protein binding | 1.03780839342631 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.69917765277148 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.526073636025138 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.284650049512347 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.236060274498333 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0799149587483721 | bayes_pls_golite062009 |
| histone binding | 0.0391625783266718 | bayes_pls_golite062009 |
|
Region A: Residues: [523-601] |
1 11 21 31 41 51
| | | | | |
1 SLGTKEAQYE DLVKKLEAKN IEISQISGKE QSLTEKNENL SNELKKVQDQ LEKLNNLNIT 60
61 TKSNYENKIS SQNEIVKAL
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [602-663] |
1 11 21 31 41 51
| | | | | |
1 VSENDTLKQR IQQLVEIKEN EQKDHTTKLE AFQKNNEQLQ KLNVEVVQLK AHELELEEQN 60
61 RH
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [664-767] |
1 11 21 31 41 51
| | | | | |
1 LKNCLEKKET GVEESLSDVK TLKQQVIVLK SEKQDITAEK LELQDNLESL EEVTKNLQQK 60
61 VQSQKRELEQ KIKELEEIKN HKRNEPSKKG TQNFTKPSDS PKKN
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [768-875] |
1 11 21 31 41 51
| | | | | |
1 ATTSNLFPNN SAAIHSPMKK CPKVDHISKS RINSSKETSK FNDEFDLSSS SNDDLELTNP 60
61 SPIQIKPVRG KIKKGSNCMK PPISSRKKLL LVEDEDQSLK ISKKRRRK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.224 | 0.189 | synaptonemal complex | a.3.1 | Cytochrome c |
| View | Download | 0.382 | 0.014 | synaptonemal complex | c.51.3 | B12-dependend dehydatases associated subunit |
