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View Structure Prediction Details

Protein: YEL043W
Organism: Saccharomyces cerevisiae
Length: 956 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEL043W.

Description E-value Query
Range
Subject
Range
YEF3_YEAST - Uncharacterized protein YEL043W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEL043W ...
YEL043W - Predicted cytoskeleton protein involved in intracellular signalling based on quantitative analysis o...
0.0 [1..956] [1..956]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1
6.0E-75 [62..746] [677..1396]
MYH2_BOVIN - Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1
1.0E-73 [62..746] [680..1399]
gi|179508, gi|10... - sp|P12883|MYH7_HUMAN Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta), gi|4557773|ref|NP...
3.0E-73 [62..746] [675..1394]
gi|14250231, gi|... - ref|NP_659210.1| myosin, heavy polypeptide 2, skeletal muscle, adult [Mus musculus], gi|14250231|gb...
3.0E-73 [62..746] [682..1401]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
4.0E-73 [62..746] [312..1031]
gi|3668187 - gi|3668187|dbj|BAA33452.1| myosin heavy chain [Theragra chalcogramma]
8.0E-73 [62..619] [677..1285]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVSVITTVL ACLWLSYRLY KFLTIPVSSI VSTLKIKTPP ATKVSIDKIA TDSVTIHWEN  60
   61 EPVKAEDNGS ADRNFISHYL LYLNNTQLAI FPNNPNSLYT CCSITGLEAE TQYQLDFITI 120
  121 NNKGFINKLP SIYCMTKARE ANEALKTRKW RRNTITSSTA MQPRNSKSEP APLPSHYSSV 180
  181 SLSTFSSNIT NSATSNNGSN LPAYTSLTTL KDLDSFSIDD LKKILICAQE DLHDVLSQQT 240
  241 SLLQDFQESK LE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [253-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LELELDNLKT HWSHEIDLRK SLKSNIKSLE NSKLLTDLKI EKLNKKIDKS KEKISKMRND  60
   61 MQKWSQEDTE LLSKDTIKEK YFKLLNESNA SVANINKEIE SLQNEISKME ESNKRLNASK 120
  121 KSLITSIVVN ANVENDKPIA SGELSAVLKK LNDFTLEKNG FLSNAGEEFL SKLNADSSLI 180
  181 KMIKQELSID QELEANWKLQ RSNLLKKISA LENQFNEMSL NNRNLKTKLM VQPYKNNGDS 240
  241 LAATNSNNSA EKNRSSGSIQ LPLSNNM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [520-721]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRTGSIDLIS NNNKSINNSN ADSAPPLRLH NPVSYSPSNE PIQPSSSLLS QLTQDTDNRS  60
   61 MLSNHISSNN ENKQQPSSYS HALPTTATAN ATATATATNG HSRSNLWTTA QFAQPSHQQV 120
  121 STELDQAFEY DNANHLISGL QNMIYDETDY PDNISNYSKG FTTDELDNYW TKQQPQVRST 180
  181 NESLFSTTGT PMSSYKANPV IS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1cii__
Description: Colicin Ia; Colicin Ia, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [722-956]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYSSSHLRQT SNATNTNPMH PQSLLAATLN DPSLQSFVRS GSFYSAPQPA NSLQNNINGN  60
   61 ETENISPRIS SDFNLLVPNL SPRLSNDVPI VPGNNTTLTP SHSNILTMNH QPTADNITRR 120
  121 SFHASSPPFN SIWNSNTNQL SPPLEEQYHL DVPVGPKVPA KEPSPKPSHK RNQSNSSISS 180
  181 AWSKFKHKSA SSPANADTDI QDSSTPSTSP SGRRMSKLLS KSGMNNLFNP HSHDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle