Protein: | RAD51 |
Organism: | Saccharomyces cerevisiae |
Length: | 400 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD51.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..400] | [1..400] |
|
0.0 | [57..397] | [1..339] |
|
0.0 | [57..397] | [1..339] |
|
0.0 | [57..397] | [1..339] |
|
0.0 | [63..397] | [3..337] |
|
0.0 | [69..397] | [8..336] |
|
0.0 | [63..397] | [1..339] |
|
0.0 | [57..397] | [1..339] |
|
0.0 | [47..397] | [6..353] |
Region A: Residues: [1-126] |
1 11 21 31 41 51 | | | | | | 1 MSQVQEQHIS ESQLQYGNGS LMSTVPADLS QSVVDGNGNG SSEDIEATNG SGDGGGLQEQ 60 61 AEAQGEMEDE AYDEAALGSF VPIEKLQVNG ITMADVKKLR ESGLHTAEAV AYAPRKDLLE 120 121 IKGISE |
Detection Method: | |
Confidence: | 311.69897 |
Match: | 1b22A_ |
Description: | DNA repair protein Rad51, N-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
DNA-dependent ATPase activity | 6.08870471440355 | bayes_pls_golite062009 |
DNA helicase activity | 5.90932638467326 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 5.45262775532714 | bayes_pls_golite062009 |
helicase activity | 4.28397455986496 | bayes_pls_golite062009 |
purine NTP-dependent helicase activity | 3.663510450664 | bayes_pls_golite062009 |
ATP-dependent helicase activity | 3.663510450664 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 2.65328018648613 | bayes_pls_golite062009 |
ATPase activity, coupled | 2.62906136657082 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.58149479936199 | bayes_pls_golite062009 |
hydrolase activity | 2.5712103536265 | bayes_pls_golite062009 |
ATPase activity | 2.56628820450144 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 2.56034830999299 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.56013654932837 | bayes_pls_golite062009 |
binding | 1.9180887037845 | bayes_pls_golite062009 |
nucleic acid binding | 1.9087142423581 | bayes_pls_golite062009 |
DNA binding | 1.87185414119548 | bayes_pls_golite062009 |
catalytic activity | 1.58067730905989 | bayes_pls_golite062009 |
protein binding | 1.45202848418786 | bayes_pls_golite062009 |
Region A: Residues: [127-400] |
1 11 21 31 41 51 | | | | | | 1 AKADKLLNEA ARLVPMGFVT AADFHMRRSE LICLTTGSKN LDTLLGGGVE TGSITELFGE 60 61 FRTGKSQLCH TLAVTCQIPL DIGGGEGKCL YIDTEGTFRP VRLVSIAQRF GLDPDDALNN 120 121 VAYARAYNAD HQLRLLDAAA QMMSESRFSL IVVDSVMALY RTDFSGRGEL SARQMHLAKF 180 181 MRALQRLADQ FGVAVVVTNQ VVAQVDGGMA FNPDPKKPIG GNIMAHSSTT RLGFKKGKGC 240 241 QRLCKVVDSP CLPEAECVFA IYEDGVGDPR EEDE |
Detection Method: | |
Confidence: | 151.154902 |
Match: | 1rea__ |
Description: | RecA protein, ATPase-domain; RecA protein, C-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
DNA clamp loader activity | 3.22518920754305 | bayes_pls_golite062009 |
protein-DNA loading ATPase activity | 3.19273435123154 | bayes_pls_golite062009 |
transporter activity | 3.13325129560423 | bayes_pls_golite062009 |
transmembrane transporter activity | 2.92327745911863 | bayes_pls_golite062009 |
DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 2.66107861968804 | bayes_pls_golite062009 |
binding | 2.64537357529343 | bayes_pls_golite062009 |
bubble DNA binding | 2.62179925837003 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 2.36915495988847 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.29436982996465 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 2.29320453203372 | bayes_pls_golite062009 |
DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 2.27303683020046 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.27190707957159 | bayes_pls_golite062009 |
DNA polymerase activity | 2.24959734952703 | bayes_pls_golite062009 |
nucleic acid binding | 2.21184938313192 | bayes_pls_golite062009 |
hydrolase activity | 2.18454736627863 | bayes_pls_golite062009 |
double-strand/single-strand DNA junction binding | 2.02697209084624 | bayes_pls_golite062009 |
telomeric DNA binding | 1.98044285764127 | bayes_pls_golite062009 |
DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
ATPase activity | 1.76238574289941 | bayes_pls_golite062009 |
substrate-specific transporter activity | 1.72529279238106 | bayes_pls_golite062009 |
helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
microtubule motor activity | 1.6537049553461 | bayes_pls_golite062009 |
ATPase activity, coupled | 1.57826779898847 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 1.37694050923424 | bayes_pls_golite062009 |
motor activity | 1.34881124154297 | bayes_pls_golite062009 |
structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
protein transporter activity | 1.25342367751911 | bayes_pls_golite062009 |
protein binding | 1.22129154759482 | bayes_pls_golite062009 |
purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
single-stranded telomeric DNA binding | 0.847538346941812 | bayes_pls_golite062009 |
double-stranded telomeric DNA binding | 0.75018916645383 | bayes_pls_golite062009 |
transcription activator activity | 0.739301862805678 | bayes_pls_golite062009 |
purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
transcription factor activity | 0.697256579145077 | bayes_pls_golite062009 |
single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 0.560681051761979 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
recombinase activity | 0.45851158693664 | bayes_pls_golite062009 |
GTPase activity | 0.437665353870877 | bayes_pls_golite062009 |
nucleotidyltransferase activity | 0.367559137329714 | bayes_pls_golite062009 |
RNA helicase activity | 0.34746349346164 | bayes_pls_golite062009 |
lysine N-acetyltransferase activity | 0.328186246219424 | bayes_pls_golite062009 |
histone acetyltransferase activity | 0.328186246219424 | bayes_pls_golite062009 |
centromeric DNA binding | 0.322818640526369 | bayes_pls_golite062009 |
mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
ATP-dependent RNA helicase activity | 0.30832907234141 | bayes_pls_golite062009 |
guanyl nucleotide binding | 0.296406132096546 | bayes_pls_golite062009 |
GTP binding | 0.295705904888768 | bayes_pls_golite062009 |
RNA-dependent ATPase activity | 0.29532978396745 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 0.29028316917561 | bayes_pls_golite062009 |
inorganic cation transmembrane transporter activity | 0.248710418805919 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.208665086324262 | bayes_pls_golite062009 |
ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
microfilament motor activity | 0.10236059675512 | bayes_pls_golite062009 |
3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 0.0704128024645565 | bayes_pls_golite062009 |
protein transmembrane transporter activity | 0.0378638259240902 | bayes_pls_golite062009 |
actin binding | 0.00482938540552702 | bayes_pls_golite062009 |