Protein: | RPO41 |
Organism: | Saccharomyces cerevisiae |
Length: | 1351 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPO41.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1351] | [1..1351] |
|
0.0 | [402..1249] | [121..967] |
|
0.0 | [407..1249] | [157..997] |
|
0.0 | [386..1249] | [136..994] |
|
0.0 | [376..1249] | [85..968] |
|
0.0 | [384..1249] | [121..980] |
Region A: Residues: [1-379] |
1 11 21 31 41 51 | | | | | | 1 MLRPAYKSLV KTSLLQRRLI SSKGSKLFKP SPDSTSTILI SEDPLVTGSS PTSSTTSGII 60 61 SSNDFPLFNK NRKDAKSSIS YQWKNPSELE FDPFNKSHAS AVTSMTRTRD VMQLWSLLEA 120 121 CLQSNLMKRA FSILESLYLV PEHKQRFIED YNMYLNSFSK NDPNFPILKM NEKLTNDLET 180 181 SFKDVNYNDK TLAIMIHHAL NFHSTTSSML LKPIISAYLK MSVNGIREIF SCLDILTISD 240 241 LNILMNDLKV ITPSQLPNSV RPILESLTLS PTPVNNIENE EGLNKVEAEN DSKLHKASNA 300 301 SSDSIKKPSL DPLREVSFHG STEVLSKDAE KLIAVDTIGM RVIRHTLLGL SLTPEQKEQI 360 361 SKFKFDANDN VLKMKPTKN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [380-423] |
1 11 21 31 41 51 | | | | | | 1 DDNNNSINFF EIYNSLPTLE EKKAFESALN IFNQDRQKVL ENRA |
Region B: Residues: [547-591] |
1 11 21 31 41 51 | | | | | | 1 RSEQVLKSES QAFRDVNKKS PEFKKLVQNA KSVFRSSQIE QSKIL |
Region C: Residues: [671-696] |
1 11 21 31 41 51 | | | | | | 1 QLLPMLVEPK PWVNWRSGGY HYTQST |
Region D: Residues: [805-820] |
1 11 21 31 41 51 | | | | | | 1 YKLEIARAFL GEKLYF |
Detection Method: | ![]() |
Confidence: | 1703.0103 |
Match: | 1aroP_ |
Description: | T7 RNA polymerase |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
nucleotidyltransferase activity | 7.61500320688433 | bayes_pls_golite062009 |
DNA-directed RNA polymerase activity | 7.08533444189463 | bayes_pls_golite062009 |
RNA polymerase activity | 7.08533444189463 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 5.40114148359009 | bayes_pls_golite062009 |
transferase activity | 4.7475061982508 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 3.58831088586896 | bayes_pls_golite062009 |
DNA polymerase activity | 3.3731931763308 | bayes_pls_golite062009 |
binding | 1.92492422240469 | bayes_pls_golite062009 |
DNA binding | 1.87721092677049 | bayes_pls_golite062009 |
nucleic acid binding | 1.64235873416087 | bayes_pls_golite062009 |
chromatin binding | 1.32386525961438 | bayes_pls_golite062009 |
catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
protein binding | 0.561579019896047 | bayes_pls_golite062009 |
exonuclease activity | 0.16454326755539 | bayes_pls_golite062009 |
3'-5' exonuclease activity | 0.0700154911930899 | bayes_pls_golite062009 |
nuclease activity | 0.0574785418962505 | bayes_pls_golite062009 |
Region A: Residues: [424-546] |
1 11 21 31 41 51 | | | | | | 1 TEAARERWKH DFEEAKARGD ISIEKNLNVK LWKWYNEMLP LVKEEINHCR SLLSEKLSDK 60 61 KGLNKVDTNR LGYGPYLTLI DPGKMCVITI LELLKLNSTG GVIEGMRTAR AVISVGKAIE 120 121 MEF |
Region B: Residues: [592-670] |
1 11 21 31 41 51 | | | | | | 1 WPQSIRARIG SVLISMLIQV AKVSVQGVDP VTKAKVHGEA PAFAHGYQYH NGSKLGVLKI 60 61 HKTLIRQLNG ERLIASVQP |
Region C: Residues: [697-733] |
1 11 21 31 41 51 | | | | | | 1 LLRTKDSPEQ VAYLKAASDN GDIDRVYDGL NVLGRTP |
Region D: Residues: [769-804] |
1 11 21 31 41 51 | | | | | | 1 APPKNSDPSI LRAWKLQVKT IANKFSSDRS NRCDTN |
Region E: Residues: [821-840] |
1 11 21 31 41 51 | | | | | | 1 PHNLDFRGRA YPLSPHFNHL |
Region F: Residues: [1124-1144] |
1 11 21 31 41 51 | | | | | | 1 EESKKQVETN LQTVFISDPF A |
Detection Method: | ![]() |
Confidence: | 1703.0103 |
Match: | 1aroP_ |
Description: | T7 RNA polymerase |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [734-768] |
1 11 21 31 41 51 | | | | | | 1 WTVNRKVFDV VSQVWNKGEG FLDIPGAQDE MVLPP |
Region B: Residues: [841-945] |
1 11 21 31 41 51 | | | | | | 1 GNDMSRGLLI FWHGKKLGPS GLKWLKIHLS NLFGFDKLPL KDRVAFTESH LQDIKDSAEN 60 61 PLTGDRWWTT ADKPWQALAT CFELNEVMKM DNPEEFISHQ PVHQD |
Region C: Residues: [1167-1205] |
1 11 21 31 41 51 | | | | | | 1 ASHMLLSAAE CGKQGLDFAS VHDSYWTHAS DIDTMNVVL |
Detection Method: | ![]() |
Confidence: | 1703.0103 |
Match: | 1aroP_ |
Description: | T7 RNA polymerase |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [946-1123] |
1 11 21 31 41 51 | | | | | | 1 GTCNGLQHYA ALGGDVEGAT QVNLVPSDKP QDVYAHVARL VQKRLEIAAE KGDENAKILK 60 61 DKITRKVVKQ TVMTNVYGVT YVGATFQIAK QLSPIFDDRK ESLDFSKYLT KHVFSAIREL 120 121 FHSAHLIQDW LGESAKRISK SIRLDVDEKS FKNGNKPDFM SSVIWTTPLG LPIVQPYR |
Region B: Residues: [1145-1166] |
1 11 21 31 41 51 | | | | | | 1 VNPVNARRQK AGLPPNFIHS LD |
Region C: Residues: [1206-1259] |
1 11 21 31 41 51 | | | | | | 1 REQFIKLHEV DLVLRLKEEF DQRYKNYVKI GKLKRSTDLA QKIIRIRKDL SRKL |
Detection Method: | ![]() |
Confidence: | 1703.0103 |
Match: | 1aroP_ |
Description: | T7 RNA polymerase |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [1260-1351] |
1 11 21 31 41 51 | | | | | | 1 GRSTTLADEI YFEKKRQELL NSPLIEDRNV GEKMVTTVSL FEDITDLDAL ELENGGDENS 60 61 GMSVLLPLRL PEIPPKGDFD VTVLRNSQYF FS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.