YRC Public Data Repository - Protein Structure Prediction

Protein:	RMD8
Organism:	Saccharomyces cerevisiae
Length:	662 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD8.

Description	E-value	Query Range	Subject Range
gi\|49640161 - gi\|49640161\|emb\|CAH02618.1\| KLLA0A00715p [Kluyveromyces lactis] gi\|49640161, gi\|... - gi\|50302193\|ref\|XP_451030.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640161\|emb\|CAH0261...	545.0	[0..20]	[662..24]
gi\|44984812 - gi\|44984812\|gb\|AAS53636.1\| AFR265Cp [Ashbya gossypii ATCC 10895] gi\|44984812, gi\|... - gi\|45198783\|ref\|NP_985812.1\| AFR265Cp [Ashbya gossypii ATCC 10895], gi\|44984812\|gb\|AAS53636.1\| AFR26...	522.0	[0..13]	[653..20]
gi\|50285665, gi\|... - gi\|50285665\|ref\|XP_445261.1\| unnamed protein product [Candida glabrata], gi\|49524565\|emb\|CAG58167.1\|... gi\|49524565 - gi\|49524565\|emb\|CAG58167.1\| unnamed protein product [Candida glabrata]	516.0	[0..1]	[658..1]
gi\|8923584, gi\|7... - gi\|8923584\|ref\|NP_060379.1\| required for meiotic nuclear division 1 homolog [Homo sapiens], gi\|70208...	465.0	[0..307]	[651..109]
gi\|114609841 - gi\|114609841\|ref\|XP_001136730.1\| PREDICTED: similar to chromosome 6 open reading frame 96 [Pan trogl...	460.0	[0..307]	[651..109]
gi\|109072332 - gi\|109072332\|ref\|XP_001098025.1\| PREDICTED: similar to CG11679-PA [Macaca mulatta]	458.0	[0..307]	[651..109]
RMND1_MOUSE - Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1	458.0	[0..307]	[651..110]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKANQPSP GEMPKRSPSI LVTDARTSKN RMSAPFAGHA AGSRKNMENA GVTKSQGVRS  60
   61 SAIGPSPLQS FTHPRRRSSG RFSDISIDNI LSDNSDIPSA RREERLSSSS SDRPRQYERL 120
  121 SSRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMINPLPPRT SKTSQKLVLI PEDDNLNHFQ TLPTNALDRQ RPKVGSMKSN SFDRLPRYSK  60
   61 EKSMARITAY NVADGFNLNQ LYKFLQETHE VSPRLYDECL YVAYTLPLLP GKGGFRIKSN 120
  121 LSKKTMGGKT LIDNLIDTSE QRDHHYEYYS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [275-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVETVEDANN NYELETSGNN NNANQDTTTV PDHLPNPVGQ QDSFNPMEPQ FFAEETPLEI  60
   61 EKRERTERIN MLKKEENDSD ASCGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [360-662]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNNNKNNDKS KLYAVEGNDQ YVQSSRSPAS PSSISTPSPP SSSQNDFDRV YKMHRDNDHE  60
   61 GNDRHAEIFI FHYGVIVFWN FTEIQEKNIL GDITFADYKN LMIRPLDEQD IETEQFHFEY 120
  121 DRDTERPRIF NDIVTLRSGD HIIELTLSHA IAQSSKLSRF ESRISPILIS VTKLPKRLAL 180
  181 YGTLGLKREQ LLKKSGKLFK LRVDVNLSST ILDTPEFFWS FEPSLHPLYV AMREYLEIDQ 240
  241 RVQVLNDRCK VFLEFFDICV DSVAERNMAR VTWWFILVIL FGVIFSLTEI FVRYVIIHRH 300
  301 TST

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	148.091515
Match:	PF02582
Description:	Uncharacterised ACR, YagE family COG1723

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits