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View Structure Prediction Details

Protein: BUD13
Organism: Saccharomyces cerevisiae
Length: 266 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD13.

Description E-value Query
Range
Subject
Range
CWC26_YEAST - Pre-mRNA-splicing factor CWC26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD13 PE=...
BUD13 - Subunit of the RES complex, which is required for nuclear pre-mRNA retention and splicing; involved ...
4.0E-78 [1..266] [1..266]
gi|19075968 - gi|19075968|ref|NP_588468.1| hypothetical protein SPCC1620.10 [Schizosaccharomyces pombe 972h-]
cwf26 - complexed with Cdc5 protein Cwf26
2.0E-59 [1..260] [6..299]
gi|222422945, gi... - gi|79319041|ref|NP_001031124.1| unknown protein [Arabidopsis thaliana], gi|44917425|gb|AAS49037.1| A...
2.0E-51 [32..260] [296..554]
BUD13_MOUSE - BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1
3.0E-45 [16..261] [346..631]
BUD13 - BUD13 homolog (S. cerevisiae)
gi|123984687, gi... - gi|123998686|gb|ABM86992.1| BUD13 homolog (yeast) [synthetic construct], gi|123984687|gb|ABM83689.1|...
1.0E-42 [15..261] [343..613]
CE00289 - status:Confirmed UniProt:P30640 protein_id:CAA78047.1
4.0E-37 [13..266] [177..457]
gi|12642598 - gi|12642598|gb|AAK00302.1|AF314193_1 Toutatis [Drosophila melanogaster]
0.001 [102..183] [1069..1149]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHQYLSET YGPTKPKNKT KKKKKESKSD ANSDKTSLIV KERLSTLQQE QEKSGVASFS  60
   61 KFDKQKSKNI WKNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.795 0.883 nucleus a.74.1 Cyclin-like

Predicted Domain #2
Region A:
Residues: [75-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETNELSHAIT HPSASSITGN ESKNDLKEIR AQEPLVTVAD KSKTRKTIYR DAQGHKIQED  60
   61 SKIDDSSFSR SKYEDEKAAE REQYLKNLNM GDVQKLGINV DAHDKKKNQT ASS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [188-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTIEDPAITF THDKERTVKT SLLGRKLYDK PAPENRFAIM PGSRWDGVHR SNGFEEKWFA  60
   61 KQNEINEKKV QSYTLQEDY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle