YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR053C
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR053C.

Description	E-value	Query Range	Subject Range
YGR053C - Putative protein of unknown function YG21_YEAST - Uncharacterized protein YGR053C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR053C ... gi\|151943333 - gi\|151943333\|gb\|EDN61646.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406924 - gi\|190406924\|gb\|EDV10191.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207345193 - gi\|207345193\|gb\|EDZ72091.1\| YGR053Cp-like protein [Saccharomyces cerevisiae AWRI1631]	0.0	[1..283]	[1..283]
gi\|16944513 - gi\|16944513\|emb\|CAB92030.2\| conserved hypothetical protein [Neurospora crassa] gi\|164423492, gi... - gi\|164423492\|ref\|XP_963145.2\| hypothetical protein NCU08476 [Neurospora crassa OR74A], gi\|157070116\|...	3.0E-5	[43..267]	[93..273]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-5	[43..267]	[140..320]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKCVCRAG IISIKGIFPR WYSNSQKVAN LGQITDYLVV KGVPNLLQKM FKESVLADNV  60
   61 VFRLFPTSHP YIPVLHGKSK YMASLNAMRM IVRKFILGDE CRLHISSVKT LTSTSHDEEV 120
  121 KSALQSYNTI TCNDKLVIKW QSCIPEDHCK ITKLEINDRL KEEKRGNGAG GSFSMRSVPV 180
  181 IDYILHPTAN NLNQSVISEY LENAAERSME NKVNETQNSK EDEKKKNDGD GKRSKKKRLS 240
  241 RLIKGTFIFE FNEENSKILV HTIEDVELIH YEKKIATRGA FAC

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits