YRC Public Data Repository - Protein Structure Prediction

Protein:	ZPR1
Organism:	Saccharomyces cerevisiae
Length:	486 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZPR1.

Description	E-value	Query Range	Subject Range
ZPR1 - Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to th... ZPR1_YEAST - Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZPR1 PE=1 SV=1 gi\|151943488 - gi\|151943488\|gb\|EDN61799.1\| Zinc finger protein [Saccharomyces cerevisiae YJM789] gi\|190406779 - gi\|190406779\|gb\|EDV10046.1\| zinc-finger protein ZPR1 [Saccharomyces cerevisiae RM11-1a] gi\|207344977 - gi\|207344977\|gb\|EDZ71944.1\| YGR211Wp-like protein [Saccharomyces cerevisiae AWRI1631]	0.0	[1..486]	[1..486]
gi\|15242258 - gi\|15242258\|ref\|NP_197640.1\| zinc finger (ZPR1-type) family protein [Arabidopsis thaliana]	0.0	[21..485]	[2..477]
ZPR1_MOUSE - Zinc finger protein ZPR1 OS=Mus musculus GN=Zpr1 PE=1 SV=1	0.0	[13..486]	[10..449]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[3..486]	[4..450]
zpr1 - zinc finger protein Zpr1 ZPR1_SCHPO - Zinc finger protein zpr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zpr1 PE=3 SV=1	0.0	[3..486]	[4..450]
ZNF259 - zinc finger protein 259 gi\|61361934, gi\|... - gi\|61361942\|gb\|AAX42130.1\| zinc finger protein 259 [synthetic construct], gi\|61361934\|gb\|AAX42129.1\|...	0.0	[13..486]	[10..449]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQKEDLFK PVGEAAAEVE DESIAEQNKA NDGVKLTGAQ DAMGHPVQEI ESLCMNCGKN  60
   61 GTTRLLLTSI PYFREIIIMS FDCPHCGFKN CEIQPASQIQ EKGSRYVLKV ECREDFNRQV 120
  121 IKSETATCKF VELDIEIPAK RGQLTTVEGL LSEMIDDLSQ DQEMRKSIDE ALYKKIDDFI 180
  181 QKVKSYINCE PNTIPITFIL DDPAGNSWIE YKPGEPQHKW SHTQYVRTDE QNVQVGIITR 240
  241 DQLEQRRQEQ LKQLAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.119186
Match:	PF03367
Description:	ZPR1 zinc-finger domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [257-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RERNPSESVK VGSANPQFLS DATDIENFNN EVQTFRASCP SCTQECETHM KPVNIPHFKE  60
   61 VIIMSTVCDH CGYKSNEVKT GGAIPDKGRR ITLYCDDAAD LSRDILKSET CSMVIPELHL 120
  121 DIQEGTLGGR FTTLEGLLRQ VYEELESRIF TQTSDSMDEA TKARWVEFFA KLKEAIAGKV 180
  181 KFTVIMEDPL AGSYIQNVYA PDPDPNMTIE DYERTKEQNE DLGLSDIKVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.79588
Match:	PF03367
Description:	ZPR1 zinc-finger domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits