| Protein: | KSP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1029 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KSP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1029] | [1..1029] |
|
|
0.0 | [11..545] | [1..522] |
|
|
0.0 | [11..545] | [1..537] |
|
|
0.0 | [22..545] | [18..533] |
|
|
0.0 | [11..542] | [1..524] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MTLDYEIYKE GGILNNRYQK IEDISEGSYG YVSLAKDVRE KRLVAVKYIF KLEDDGQYDG 60
61 PQDDENDCDS SDCDDDEDTK V
|
| Detection Method: |  |
| Confidence: | 13.0 |
| Match: | 1gxcA_ |
| Description: | Chk2 kinase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.47621789723131 | bayes_pls_golite062009 |
| protein binding | 2.22336167249906 | bayes_pls_golite062009 |
|
Region A: Residues: [82-308] |
1 11 21 31 41 51
| | | | | |
1 DTDRHENENG NASSNNGSSR EKKHNLYKHK KSLISSKVKS RLSNNICLEA MYEVDIQTKI 60
61 GRHQNIAALL DFFDSYIIME YCSGGDLYEA IKADAVPKKT KSITHIITQI MDAIEYVHNK 120
121 GIYHRDIKPE NILISGIDWT IKLTDWGLAT TDKTSMDRNV GSERYMSPEL FDSNLDIKER 180
181 KEPYDCAKVD LWAMGIVFLN IVFHKNPFSI ANQSDKSFCY FAANREA
|
| Detection Method: | |
| Confidence: | 95.228787 |
| Match: | 1b6cB_ |
| Description: | Type I TGF-beta receptor R4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [309-391] |
1 11 21 31 41 51
| | | | | |
1 LFDVFSTMAY DFFQVLRYSL TIDPANRDLK MMRTELQNLS EYTLDDEYYN NLDEGYEETM 60
61 IDGLPPQPVP PSSAPVSLPT PIS
|
| Detection Method: | |
| Confidence: | 273.9897 |
| Match: | 1a06__ |
| Description: | Calmodulin-dependent protein kinase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [392-463] |
1 11 21 31 41 51
| | | | | |
1 SSNKQHMPEF KKDFNFNNVN ERKRSDVSQN QNVASGFFKK PSTQQQKFFN QGYNTTLSTH 60
61 ERAKSAPKFK FK
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1iq5A_ |
| Description: | Calmodulin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [464-556] |
1 11 21 31 41 51
| | | | | |
1 KRNKYGRTDN QFSKPVNIED RKKSKILKKS RKPLGIPTPN THMNNFFHDY KARDEFNTRD 60
61 FFTPPSVQHR YMEGFSNNNN KQYRQNRNYN NNN
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1iq5A_ |
| Description: | Calmodulin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [557-1029] |
1 11 21 31 41 51
| | | | | |
1 NNSNNNHGSN YNNFNNGNSY IKGWNKNFNK YRRPSSSSYT GKSPLSRYNM SYNHNNNSSI 60
61 NGYARRGSTT TVQHSPGAYI PPNARNHHVS PTNQFLRVPQ STAPDISTVL GGKPSYQEHY 120
121 TQDSMDSEGD HDSDDVLFTL EEGDHDFVNG MDNLSINDHL PHTTVGSHNE VFVHASTNHN 180
181 NNGNNNHIDT NSTTNQYHRQ YIPPPLTTSL HINNNNNESN ELPDLLKSPA SSEAHLNLSS 240
241 GPIDPILTGN IGNRYSHSSD SKELEQERRL SMEQKFKNGV YVPPHHRKSF NLGTQVPPMN 300
301 MKTSNEATLS VSHNSVNFGG SYNSRRSSAN ESNPLHMNKA LEKLSSSPGA KSSFVGFPKP 360
361 LLPRNHSSTT IALQNEDVFA DSNNDAIIFE DEEYEGESDK MAHGKMEGGD NESSSTSPDE 420
421 RQIFGPYEIY AQTFAGSTHD KKLGAGRKTS IQDEMVGSLE QYKNNWLILQ QQD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
