| Protein: | SAM35 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 329 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAM35.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..329] | [1..329] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MVSSFSVPMP VKRIFDTFPL QTYAAQTDKD EAVALEIQRR SYTFTERGGG SSELTVEGTY 60
61 KLGVYNVFLE ANTGAALATD PWCLFVQLAL CQKNGLVLPT HSQEQTPSHT C
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.549 | d.93.1 | SH2 domain |
| View | Download | 0.512 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.552 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.626 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.626 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.552 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.549 | d.93.1 | SH2 domain |
| View | Download | 0.512 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.500 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.500 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.432 | d.82.2 | Frataxin-like |
| View | Download | 0.414 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.413 | d.131.1 | DNA clamp |
| View | Download | 0.411 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.356 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.345 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.331 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.331 | d.93.1 | SH2 domain |
| View | Download | 0.320 | d.93.1 | SH2 domain |
| View | Download | 0.319 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.307 | a.118.8 | TPR-like |
| View | Download | 0.304 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.302 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.294 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.293 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.291 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.287 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.285 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.280 | b.60.1 | Lipocalins |
| View | Download | 0.266 | b.60.1 | Lipocalins |
| View | Download | 0.264 | d.82.2 | Frataxin-like |
| View | Download | 0.261 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.259 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.256 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.245 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.244 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.241 | b.60.1 | Lipocalins |
| View | Download | 0.230 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.230 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.227 | b.31.1 | EV matrix protein |
| View | Download | 0.221 | d.82.2 | Frataxin-like |
| View | Download | 0.213 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.208 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.206 | d.217.1 | SAND domain-like |
| View | Download | 0.205 | c.47.1 | Thioredoxin-like |
| View | Download | 0.203 | b.60.1 | Lipocalins |
| View | Download | 0.202 | b.40.4 | Nucleic acid-binding proteins |
|
Region A: Residues: [112-329] |
1 11 21 31 41 51
| | | | | |
1 NHEMLVLSRL SNPDEALPIL VEGYKKRIIR STVAISEIMR SRILDDAEQL MYYTLLDTVL 60
61 YDCWITQIIF CASDAQFMEL YSCQKLSGSI VTPLDVENSL LQKLSAKSLK ISLTKRNKFQ 120
121 FRHREIVKSM QGVYHNHHNS VNQEQVLNVL FENSKQVLLG LKDMLKSDGQ PTYLHLKIAS 180
181 YILCITNVKE PIKLKTFVEN ECKELVQFAQ DTLKNFVQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
