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View Structure Prediction Details

Protein: YHR218W
Organism: Saccharomyces cerevisiae
Length: 603 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR218W.

Description E-value Query
Range
Subject
Range
YHR218W - Helicase-like protein encoded within the telomeric Y' element
YH18_YEAST - Putative uncharacterized protein YHR218W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
0.0 [1..603] [1..603]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [229..594] [143..508]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKRSFEKI VVSVMVGKNV QKFLTFVEDE PDFQGGPIPS KYLIPKKINL MVYTLFQVHT  60
   61 LKFNRKDYDT LSLFYLNRGY YNELSFRVLE RCYEIASARP NDSSTMRTFT DFVSGTPIVR 120
  121 SLQKSTIRKY GYNLAPYMFL LLHVDELSIF SAYQASLPGE KKVDTERLKR DLC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRKPTEIKYF SQICNDMMNK KDRLGDVLAT AQRIRRRYNK NGSSEPRLKT LDGLTSERWI  60
   61 QWLGLESDYH CSFSSTRNAE DVVAGEAASS DHDQKISRVT RKRPREP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [281-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSTNDILVAG RKLFGSSFEF RDLHQLRLCH EIYMADTPSV AVQAPPGYGK TELFHLPLIA  60
   61 LASKGDVKYV SFLFVPYTVL LANCMIRLGR RGCLNVAPVR NFIEEGCDGV TDLYVGIYDD 120
  121 LASTNFTDRI AAWENIVECT FRTNNVKLGY LIVDEFHNFE TEVYRQSQFG GITNLDFDAF 180
  181 EKAIFLSGTA PEAVADAALQ RIGLTGLAKK SMDINELKRS EDLSRGLSSY PTRMFNLIKE 240
  241 KSEVPLGHVH KIWKKVESQP EEALKLLLAL F

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.337242
Match: PF00270
Description: DEAD/DEAH box helicase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [552-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIEPESKAIV VASTTNEVEE LACSWRKYFR VVWIHGKLGC CRKGVSHKGV CH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle