YRC Public Data Repository - Protein Structure Prediction

Protein:	UBX6
Organism:	Saccharomyces cerevisiae
Length:	396 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX6.

Description	E-value	Query Range	Subject Range
gi\|190409451 - gi\|190409451\|gb\|EDV12716.1\| UBX domain-containing protein 6 [Saccharomyces cerevisiae RM11-1a] UBX6_YEAST - UBX domain-containing protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX6 PE=... gi\|151945037 - gi\|151945037\|gb\|EDN63288.1\| ubiquitin regulatory X [Saccharomyces cerevisiae YJM789] UBX6 - UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is ...	0.0	[1..396]	[1..396]
gi\|7527718, gi\|2... - gi\|7527718\|gb\|AAF63167.1\|AC010657_3 T5E21.7 [Arabidopsis thaliana], pir\|\|D86280 protein T5E21.7 [imp...	2.0E-46	[9..259]	[232..507]
gi\|3882309 - gi\|3882309\|dbj\|BAA34514.1\| KIAA0794 protein [Homo sapiens]	7.0E-46	[7..268]	[147..490]
ubx2 - UBX domain protein Ubx2 UBX2_SCHPO - UBX domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx2 PE=1 ...	2.0E-43	[14..261]	[160..422]
UBXN1_MOUSE - UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1	2.0E-41	[1..264]	[1..291]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEMSGIDSL FHDRVVHDYS HTSEQVIVVY ISSAAGDNSW LHQWFKPGNL SDEERENILW  60
   61 VRLVNGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KECLLFKSIF PSSSAPSINI LQNGLLECSI QGNSLSREQD PWETFINGLQ SVFKGQVTKR  60
   61 KLFSKSNEEY QRVKRMIQND KLERKYVFQN TNDPQRKPQK WKQLTVTDNV SYKSQKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [185-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLAQNYCTLQ LKLPNGYTIS NTFPPQTKLH KVRMWLDYNC YDDGTPYLFH RNIPRVTLTR  60
   61 NDELKSLQEL DLLPRSTLIL EPLEANNKTF DYMEQSSLLH KVYSGLTSFW AKEPEVDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1h8cA_
Description:	Fas-assosiated factor 1, Faf1
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [303-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSRLGYQRL GTNVSNSANY SLQKLSSLDM VSDGGGGGGG DSMTPSAYTT PRMYPSNGTS  60
   61 QLRQNVSELN LSSNNSASNT KVRTLGYSNN NGNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits