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View Structure Prediction Details

Protein: YJL220W, YIL171W-A
Organism: Saccharomyces cerevisiae
Length: 150 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL220W, YIL171W-A.

Description E-value Query
Range
Subject
Range
gi|496945 - gi|496945|emb|CAA83994.1| ORF [Saccharomyces cerevisiae]
87.0 [0..1] [46..79]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLFDQGKAV LVRTVGWPDL FVVGNIVTHI ILWRVVKWRD PNGIGTKLFD VLQLGGNTLH  60
   61 ITPTIVVGVF ETCGINLINC GLFPPLGFCF WMCRRNSHCT LLSYLYEKTF TFVCVFGLVN 120
  121 GTYILVQLIP RVKKSSLLIY VCGRLTNDRK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.654 a.79.1 Antitermination factor NusB
View Download 0.529 a.54.1 Domain of early E2A DNA-binding protein, ADDBP
View Download 0.521 a.74.1 Cyclin-like
View Download 0.513 a.74.1 Cyclin-like
View Download 0.512 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.512 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.499 a.47.5 Description not found.
View Download 0.430 a.74.1 Cyclin-like
View Download 0.422 a.168.1 GEF domain of SopE toxin


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