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View Structure Prediction Details

Protein: YJR028W
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR028W.

Description E-value Query
Range
Subject
Range
YNL054W-B - TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...
YN12B_YEAST - Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
566.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS HISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.244125
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYQMSPMYFP PGPQSQFPQY PSSVGTPLST PSPESGNTFT DSSSADSDMT STKKYVRPPP  60
   61 MLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [177-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNDFPNWVK TYIKFLQNSN LGGIIPTVNG KPVRQITDDE LTFLYNTFQI FAPSQFLPTW  60
   61 VKDILSVDYT DIMKILSKSI EKMQSDTQEA NDIVTLANLQ YNGSTPADAF ETKVTNIIDR 120
  121 LNNNGIHINN KVACQLIMRG LSGEYKFLRY TRHRHLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [334-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAELFLDI HAIYEEQQGS RNSKPNYRRN PSDEKNDSRS YTNTTKPKVI ARNPQKTNNS  60
   61 KSKTARAHNV STSNNSPSTD NDSISKSTTE PIQLNNKHDL HLRPETY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle