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View Structure Prediction Details

Protein: PGM1
Organism: Saccharomyces cerevisiae
Length: 570 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGM1.

Description E-value Query
Range		 Subject
Range
gi|190408333 - gi|190408333|gb|EDV11598.1| phosphoglucomutase [Saccharomyces cerevisiae RM11-1a]
gi|207342323 - gi|207342323|gb|EDZ70115.1| YMR105Cp-like protein [Saccharomyces cerevisiae AWRI1631]
PGM2_YEAST - Phosphoglucomutase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGM2 PE=1 SV=1
PGM2 - Phosphoglucomutase, catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which ...
 0.0 [1..570] [1..569]
PGMC2_ARATH - Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=2 SV=1
 0.0 [1..570] [2..585]
PGMC_MESCR - Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1
 0.0 [3..570] [4..583]
PGMC_PEA - Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1
 0.0 [3..570] [4..582]
gi|18076790 - gi|18076790|emb|CAC85913.1| phosphoglucomutase [Triticum aestivum]
 0.0 [1..570] [1..581]
PGMC_SOLTU - Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1
 0.0 [2..570] [3..583]
PGM1_RABIT - Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2
 0.0 [3..570] [2..562]

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Predicted Domain #1
Region A:
Residues: [1-192] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLIDSVPT VAYKDQKPGT SGLRKKTKVF MDEPHYTENF IQATMQSIPN GSEGTTLVVG  60
   61 GDGRFYNDVI MNKIAAVGAA NGVRKLVIGQ GGLLSTPAAS HIIRTYEEKC TGGGIILTAS 120
  121 HNPGGPENDL GIKYNLPNGG PAPESVTNAI WEASKKLTHY KIIKNFPKLN LNKLGKNQKY 180
  181 GPLLVDIIDP AK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1672.0
Match: 1c47A_
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoglucomutase activity 3.58264389178108 bayes_pls_golite062009
binding 1.81828980398861 bayes_pls_golite062009
structural molecule activity 1.71130645303643 bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases 0.9938893438261 bayes_pls_golite062009
phosphomannomutase activity 0.96914970670646 bayes_pls_golite062009
catalytic activity 0.792640318995558 bayes_pls_golite062009
protein binding 0.359358565373414 bayes_pls_golite062009
isomerase activity 0.340395019264179 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [193-306] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYVQFLKEIF DFDLIKSFLA KQRKDKGWKL LFDSLNGITG PYGKAIFVDE FGLPAEEVLQ  60
   61 NWHPLPDFGG LHPDPNLTYA RTLVDRVDRE KIAFGAASDG DGDRNMIYGY GPAF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [387-421] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHIREKDGLW AIIAWLNILA IYHRRNPEKE ASIKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1672.0
Match: 1c47A_
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [307-386] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSPGDSVAII AEYAPEIPYF AKQGIYGLAR SFPTSSAIDR VAAKKGLRCY EVPTGWKFFC  60
   61 ALFDAKKLSI CGEESFGTGS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [422-432] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQDEFWNEYG R

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [484-494] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYRDLDGSIS E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1672.0
Match: 1c47A_
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [433-483] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFFTRYDYEH IECEQAEKVV ALLSEFVSRP NVCGSHFPAD ESLTVIDCGD F

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [495-570] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQGLFVKFSN GTKFVLRLSG TGSSGATIRL YVEKYTDKKE NYGQTADVFL KPVINSIVKF  60
   61 LRFKEILGTD EPTVRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1672.0
Match: 1c47A_
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle