YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL13
Organism:	Saccharomyces cerevisiae
Length:	275 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL13.

Description	E-value	Query Range	Subject Range
gi\|394812 - gi\|394812\|emb\|CAA52022.1\| mitoribosomal protein YmL13 [Saccharomyces cerevisiae]	0.0	[1..275]	[1..275]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRKGGHSM RMSSLLKLHC IRPLPQRSVW LSGYKQKARC IHSSAANGDF MSWFKRKKQE  60
   61 EHQEPVKDTK QLIKDIEEGT NEASSQSSSN NKNRLELIPE NFIGEGSRRC KRQKELKLAV 120
  121 SSAPFNQWLS RDKITSDNQL DDMILQATEK TLGKVDQDVQ FSDLVAKFQF TKFLQSKSGY 180
  181 LIPDYELTTL STPLQFKRYI KEKILPSAND PKLAYKEAEP NAIHPFSDNY ASPNIYVVND 240
  241 VTSKEQKSKY DTIMKEIQKL EDDATRKALE TARSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits