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View Structure Prediction Details

Protein: YKR041W
Organism: Saccharomyces cerevisiae
Length: 250 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR041W.

Description E-value Query
Range
Subject
Range
gi|2131123 - gi|2131123|emb|CAA82115.1| unnamed protein product [Saccharomyces cerevisiae]
212.0 [0..15] [123..15]
gi|44983036, gi|... - gi|45188192|ref|NP_984415.1| ADR319Wp [Ashbya gossypii ATCC 10895], gi|44983036|gb|AAS52239.1| ADR31...
gi|44983036 - gi|44983036|gb|AAS52239.1| ADR319Wp [Ashbya gossypii ATCC 10895]
61.0 [0..95] [247..91]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDDYMNSD DDNDAEKRYV RPIFVRKRRR EEDYVATSKD NIHHHPCDWS AKPSQRQNEN  60
   61 EQKSTIRLVP VAMNTPKCQE KKKKRKGVGT TSHEATLFEY GESIAGYKCV TTESERDRLK 120
  121 RSHESESSSE SEVDVFAFDQ AKGISSKVEA EERYARAVRQ YWRMTKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.205 N/A N/A d.159.1 Metallo-dependent phosphatases

Predicted Domain #2
Region A:
Residues: [168-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPATLPLPGT PTLAAVSLDM IDDKSVEQFY TMSSALMDAN RLDLIRRDRI RWHPDKHRYH  60
   61 KSKVTKLFQA INGLWEQEKT EKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.975 a.47.2 t-snare proteins
View Download 0.975 a.47.2 t-snare proteins
View Download 0.919 a.7.8 GAT domain
View Download 0.858 a.7.8 GAT domain
View Download 0.858 a.7.8 GAT domain
View Download 0.827 a.2.15 Description not found.
View Download 0.823 a.7.11 Description not found.
View Download 0.818 a.2.6 Effector domain of the protein kinase pkn/prk1
View Download 0.765 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.754 a.2.2 Ribosomal protein L29 (L29p)
View Download 0.721 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.720 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.611 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.607 a.16.1 S15/NS1 RNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle