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View Structure Prediction Details

Protein: YKR078W
Organism: Saccharomyces cerevisiae
Length: 585 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR078W.

Description E-value Query
Range
Subject
Range
gi|55725081 - gi|55725081|emb|CAH89408.1| hypothetical protein [Pongo abelii]
gi|197099524 - gi|197099524|ref|NP_001127143.1| sorting nexin 1 [Pongo abelii]
426.0 [0..69] [583..32]
gi|114657542 - gi|114657542|ref|XP_001174058.1| PREDICTED: sorting nexin 1 isoform 4 [Pan troglodytes]
425.0 [0..69] [583..32]
gi|62897145 - gi|62897145|dbj|BAD96513.1| sorting nexin 1 isoform a variant [Homo sapiens]
425.0 [0..69] [583..32]
SNX1_RAT - Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1
425.0 [0..69] [580..32]
gi|61369357, gi|... - gi|61369357|gb|AAX43322.1| sorting nexin 1 [synthetic construct], gi|61369351|gb|AAX43321.1| sorting...
423.0 [0..69] [583..32]
SNX1_MACFA - Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1
422.0 [0..69] [583..32]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDKASHAS PSIGVNEFVV QGEISIDDSE RSVKSVSVSI SDDEDSKTDV QDNMATPSTR  60
   61 SKFQTDLAID NRLLEKDPKY KKLFTEKRRR RRPESCINLM TKGKGTGQKD NINDQIFSLR 120
  121 ILPGSDLNSL KDSLWIIKIS TQPDVEKTIA RAFSDFYWLY HQLQNNHWGK TIPPPTRSNI 180
  181 LVEKDEFAIN HLFMIRNNEK YDPIFNFKPE YIISLQLMAM IKHIFNDKVL RLDSNFIDFI 240
  241 SWDDDLPESL QIV

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 9.92
Match:
Description: No description for 1h6hA was found.

Predicted Domain #2
Region A:
Residues: [254-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDDSTFTGDK ILMTSSQFRE LKEFHKQSKK VESITNSHAS LIPVTELTEI YISPTKLFSR  60
   61 KDYQRLFQPQ STDNTFNNND PLIQEWIPKS KTLFTSLSFG SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.732 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.726 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.661 N/A N/A a.47.2 t-snare proteins
View Download 0.629 N/A N/A a.29.16 Description not found.
View Download 0.595 N/A N/A d.74.4 Prokaryotic AspRS, insert domain
View Download 0.590 N/A N/A a.71.1 Endoplasmic reticulum protein ERP29, C-domain
View Download 0.567 N/A N/A d.74.4 Prokaryotic AspRS, insert domain
View Download 0.556 N/A N/A a.71.1 Endoplasmic reticulum protein ERP29, C-domain
View Download 0.546 N/A N/A a.7.8 GAT domain
View Download 0.537 N/A N/A a.51.1 Cytochrome c oxidase subunit h

Predicted Domain #3
Region A:
Residues: [356-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APTYQEASTE IQACHDWVSI SKEQWKQLLY HVLQYIVDEA VKVNSVINEF TECLKQISLD  60
   61 EVIRANSELF LKFSKLNESF LKKFKGASRQ DILKLIILFD ENVRFCESFE SILNQRLKLG 120
  121 KILSIIEVDL DKKKNFLDKL SPGNNNSNNE DLKIRTAEDE YRIVLKRYNR VKQSWEKIME 180
  181 DILNERKEFE KREAAEVNSC LKSIRDLNMD EKKHYLQLWQ DFVPDEHISQ 

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.82
Match:
Description: No description for 1i84S was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle