YRC Public Data Repository - Protein Structure Prediction

Protein:	LOT6
Organism:	Saccharomyces cerevisiae
Length:	191 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOT6.

Description	E-value	Query Range	Subject Range
gi\|207343213 - gi\|207343213\|gb\|EDZ70745.1\| YLR011Wp-like protein [Saccharomyces cerevisiae AWRI1631] LOT6_YEAST - NAD(P)H-dependent FMN reductase LOT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LOT... gi\|190406052 - gi\|190406052\|gb\|EDV09319.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151941179 - gi\|151941179\|gb\|EDN59557.1\| low temperature-responsive protein [Saccharomyces cerevisiae YJM789] LOT6 - FMN-dependent NAD(P)H:quinone reductase, may be involved in quinone detoxification; expression eleva...	2.0E-38	[1..191]	[1..191]
gi\|25329238 - pir\|\|D97330 multimeric flavodoxin WrbA family protein [imported] - Clostridium acetobutylicum gi\|15026597, gi\|... - gi\|15896742\|ref\|NP_350091.1\| multimeric flavodoxin WrbA family protein [Clostridium acetobutylicum A...	3.0E-30	[1..190]	[1..189]
gi\|17938906, gi\|... - gi\|17938906\|ref\|NP_535694.1\| hypothetical protein Atu5322 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25374306 - pir\|\|AD3199 conserved hypothetical protein Atu5322 [imported] - Agrobacterium tumefaciens (strain C5...	3.0E-30	[2..188]	[30..202]
gi\|41327092, gi\|... - gi\|62391750\|ref\|YP_227152.1\| NADPH-dependent FMN reductase [Corynebacterium glutamicum ATCC 13032], ...	5.0E-30	[1..190]	[1..181]
ARREH_RHIME - NADPH-dependent FMN reductase ArsH OS=Rhizobium meliloti (strain 1021) GN=arsH PE=1 SV=1 gi\|15074006 - gi\|15074006\|emb\|CAC45653.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021]	2.0E-29	[2..188]	[36..208]
gi\|11691636 - gi\|11691636\|emb\|CAC18655.1\| ArsH protein [Pseudomonas putida]	2.0E-29	[2..188]	[24..196]
gi\|17232269, gi\|... - gi\|17232269\|ref\|NP_488817.1\| hypothetical protein alr4777 [Nostoc sp. PCC 7120], gi\|17133914\|dbj\|BAB... gi\|25535566 - pir\|\|AI2402 hypothetical protein alr4777 [imported] - Nostoc sp. (strain PCC 7120)	5.0E-29	[1..189]	[2..175]
gi\|11347879 - pir\|\|A83362 conserved hypothetical protein PA2280 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9948309, gi\|1... - gi\|9948309\|gb\|AAG05668.1\|AE004653_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g...	1.0E-28	[2..188]	[25..197]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGIIMGSV RAKRVCPEIA AYVKRTIENS EELIDQKLKI QVVDLQQIAL PLYEDDDELI  60
   61 PAQIKSVDEY ADSKTRSWSR IVNALDIIVF VTPQYNWGYP AALKNAIDRL YHEWHGKPAL 120
  121 VVSYGGHGGS KCNDQLQEVL HGLKMNVIGG VAVKIPVGTI PLPEDIVPQL SVHNEEILQL 180
  181 LASCIETTRN K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1qrdA_
Description:	NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits