| Protein: | YPS3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 508 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPS3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..508] | [1..508] |
|
|
0.0 | [1..396] | [1..379] |
|
|
0.0 | [1..396] | [1..379] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MKLQLAAVAT LAVLTSPAFG RVLPDGKYVK IPFTKKKNGD NGELSKRSNG HEKFVLANEQ 60
61 SFYS
|
|
Region B: Residues: [208-244] |
1 11 21 31 41 51
| | | | | |
1 DATAYSLFLN DESQSSGSIL FGAVDHSKYE GQLYTIP
|
|
Region C: Residues: [379-433] |
1 11 21 31 41 51
| | | | | |
1 NAYVVYDLDN YEISLAQAKY GTGKENVEVI KSTVPSAIRA PSYNNTWSNY ASATS
|
| Detection Method: |  |
| Confidence: | 918.68867 |
| Match: | 1ypsA_ |
| Description: | No description for 1ypsA_ was found. |
| Term | Confidence | Notes |
| aspartic-type endopeptidase activity | 7.9145950161796 | bayes_pls_golite062009 |
| aspartic-type peptidase activity | 7.9145950161796 | bayes_pls_golite062009 |
| peptidase activity | 5.78181196721293 | bayes_pls_golite062009 |
| endopeptidase activity | 5.4888481808613 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 5.39972232367526 | bayes_pls_golite062009 |
| hydrolase activity | 4.34796304893506 | bayes_pls_golite062009 |
| catalytic activity | 1.54514410489082 | bayes_pls_golite062009 |
| binding | 1.10054369202721 | bayes_pls_golite062009 |
| receptor binding | 0.561225023505917 | bayes_pls_golite062009 |
| protein binding | 0.193907750061394 | bayes_pls_golite062009 |
|
Region A: Residues: [65-207] |
1 11 21 31 41 51
| | | | | |
1 VELAIGTPSQ NLTVLLDTGS ADLWVPGKGN PYCGSVMDCD QYGVFDKTKS STFKANKSSP 60
61 FYAAYGDGTY AEGAFGQDKL KYNELDLSGL SFAVANESNS TFGVLGIGLS TLEVTYSGKV 120
121 AIMDKRSYEY DNFPLFLKHS GAI
|
|
Region B: Residues: [245-378] |
1 11 21 31 41 51
| | | | | |
1 LVNLYKSQGY QHPVAFDVTL QGLGLQTDKR NITLTTTKLP ALLDSGTTLT YLPSQAVALL 60
61 AKSLNASYSK TLGYYEYTCP SSDNKTSVAF DFGGFRINAP LSDFTMQTSV GTCVLAIIPQ 120
121 AGNATAILGD SFLR
|
| Detection Method: | |
| Confidence: | 918.68867 |
| Match: | 1ypsA_ |
| Description: | No description for 1ypsA_ was found. |
|
Region A: Residues: [434-508] |
1 11 21 31 41 51
| | | | | |
1 GGNIFTTVRT FNGTSTATTT RSTTTKKTNS TTTAKSTHKS KRALQRAATN SASSIRSTLG 60
61 LLLVPSLLIL SVFFS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.537 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.580 | a.22.1 | Histone-fold |
| View | Download | 0.593 | d.64.1 | eIF1-like |
| View | Download | 0.687 | a.46.1 | Methionine synthase domain |
| View | Download | 0.489 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.468 | a.105.1 | FIS-like |
| View | Download | 0.457 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.449 | a.112.1 | Description not found. |
| View | Download | 0.434 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.401 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.386 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.378 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.378 | a.2.3 | Chaperone J-domain |
| View | Download | 0.356 | a.64.1 | Saposin |
| View | Download | 0.336 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.333 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.329 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.322 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.321 | a.46.1 | Methionine synthase domain |
| View | Download | 0.320 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.317 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.316 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.312 | a.22.1 | Histone-fold |
| View | Download | 0.307 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.303 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.301 | b.1.2 | Fibronectin type III |
| View | Download | 0.299 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.297 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.290 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.287 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.284 | a.46.1 | Methionine synthase domain |
| View | Download | 0.278 | c.55.4 | Translational machinery components |
| View | Download | 0.278 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.270 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.268 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.258 | c.55.4 | Translational machinery components |
| View | Download | 0.258 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.251 | a.77.1 | DEATH domain |
| View | Download | 0.246 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.246 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.243 | d.58.12 | eEF-1beta-like |
| View | Download | 0.238 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.233 | a.22.1 | Histone-fold |
| View | Download | 0.226 | a.77.1 | DEATH domain |
| View | Download | 0.225 | a.77.1 | DEATH domain |
| View | Download | 0.219 | d.6.1 | Prion-like |
| View | Download | 0.208 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.207 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.207 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.207 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.206 | a.46.1 | Methionine synthase domain |
| View | Download | 0.204 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.200 | a.85.1 | Hemocyanin, N-terminal domain |
