YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS30B, RPS30A
Organism:	Saccharomyces cerevisiae
Length:	63 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS30B, RPS30A.

Description	E-value	Query Range	Subject Range
gi\|226530702, gi... - gi\|68367548\|ref\|XP_687071.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|226530702\|ref\|NP_0010...	102.0	[0..2]	[55..74]
gi\|69608642 - gi\|69608642\|emb\|CAJ01892.1\| ubiquitin/ribosomal protein S30e fusion protein [Hister sp. APV-2005]	100.0	[0..2]	[55..71]
gi\|62083371 - gi\|62083371\|gb\|AAX62410.1\| ribosomal protein S30 [Lysiphlebus testaceipes]	98.0	[0..2]	[62..71]
gi\|94449819 - gi\|94449819\|gb\|ABF19508.1\| unknown [Schistosoma japonicum]	96.0	[0..2]	[63..72]
gi\|115978352, gi... - gi\|115978352\|ref\|XP_001187348.1\| PREDICTED: similar to ubiquitin-like/S30 ribosomal fusion protein [...	95.0	[0..2]	[55..78]
gi\|51011536 - gi\|51011536\|gb\|AAT92177.1\| 40S ribosomal protein S30 [Ixodes pacificus]	94.0	[0..2]	[55..73]
gi\|56462190 - gi\|56462190\|gb\|AAV91378.1\| hypothetical protein 17 [Lonomia obliqua]	93.0	[0..2]	[55..71]
gi\|15213844 - gi\|15213844\|gb\|AAK92197.1\|AF400225_1 ribosomal protein S30 [Spodoptera frugiperda]	92.0	[0..2]	[55..72]
gi\|66529866 - gi\|66529866\|ref\|XP_624488.1\| PREDICTED: similar to Ribosomal protein S30 CG15697-PA, isoform A [Apis...	92.0	[0..2]	[55..71]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVHGSLAR AGKVKSQTPK VEKTEKPKKP KGRAYKRLLY TRRFVNVTLV NGKRRMNPGP  60
   61 SVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.638272
Match:	PF04758.5
Description:	No description for PF04758.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.696	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.629	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.611	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.577	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.560	N/A	N/A	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.309	N/A	N/A	d.9.2	Description not found.
View	Download	0.291	N/A	N/A	b.34.2	SH3-domain
View	Download	0.259	N/A	N/A	b.38.2	YhbC-like, C-terminal domain
View	Download	0.244	N/A	N/A	d.58.17	Metal-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits