YRC Public Data Repository - Protein Structure Prediction

Protein:	TMA10
Organism:	Saccharomyces cerevisiae
Length:	86 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA10.

Description	E-value	Query Range	Subject Range
STF2 - Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p may act as st... STF2_YEAST - ATPase-stabilizing factor 15 kDa protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	145.0	[0..1]	[83..1]
gi\|223960 - gi\|223960\|prf\|\|1006225A ATP synthase regulating factor	139.0	[0..2]	[83..1]
gi\|45199023, gi\|... - gi\|45199023\|ref\|NP_986052.1\| AFR505Cp [Ashbya gossypii ATCC 10895], gi\|44985098\|gb\|AAS53876.1\| AFR50... gi\|44985098 - gi\|44985098\|gb\|AAS53876.1\| AFR505Cp [Ashbya gossypii ATCC 10895]	123.0	[0..1]	[84..1]
gi\|49525656 - gi\|49525656\|emb\|CAG59273.1\| unnamed protein product [Candida glabrata] gi\|50287839, gi\|... - gi\|50287839\|ref\|XP_446349.1\| unnamed protein product [Candida glabrata], gi\|49525656\|emb\|CAG59273.1\|...	122.0	[0..1]	[82..1]
gi\|49642139 - gi\|49642139\|emb\|CAH01857.1\| KLLA0C18117p [Kluyveromyces lactis] gi\|49642139, gi\|... - gi\|50306089\|ref\|XP_453006.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642139\|emb\|CAH0185...	108.0	[0..1]	[72..1]
gi\|49652296, gi\|... - gi\|50406425\|ref\|XP_456632.1\| hypothetical protein DEHA0A07150g [Debaryomyces hansenii CBS767], gi\|49...	82.0	[0..1]	[83..1]
gi\|50548079, gi\|... - gi\|50548079\|ref\|XP_501509.1\| YALI0C06237p [Yarrowia lipolytica], gi\|49647376\|emb\|CAG81810.1\| unnamed... gi\|49647376 - gi\|49647376\|emb\|CAG81810.1\| YALI0C06237p [Yarrowia lipolytica]	61.0	[0..10]	[77..3]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTSKWTVH EAKSNPKYFT HNGNFGESPN HVKRGGYGKG NWGKPGDEIN DLIDSGEIKT  60
   61 VFNKTRRGSN SQNNERRLSD LQQYHI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.369	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits