YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS22B
Organism:	Saccharomyces cerevisiae
Length:	130 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS22B.

Description	E-value	Query Range	Subject Range
ENSPTRT00000014415 - null gi\|90074910 - gi\|90074910\|dbj\|BAE87135.1\| unnamed protein product [Macaca fascicularis] ENSCJAT000000436... - null, null RS15A_RAT - 40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2 RPS15A - ribosomal protein S15a tr\|G3IKE2\|G3IKE2... - 40S ribosomal protein S15a OS=Cricetulus griseus GN=I79_024343 PE=3 SV=1 gi\|73958787, gi\|... - gi\|73958789\|ref\|XP_862234.1\| PREDICTED: similar to ribosomal protein S15a isoform 10 [Canis familiar... tr\|F7BLU1\|F7BLU1... - Ribosomal protein S15a OS=Equus caballus OX=9796 GN=RPS15A PE=3 SV=1 RS15A_MOUSE - 40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=1 SV=2 CCDS10571.1_1 - null RS15A_BOVIN - 40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1 ENSMMUG000000055... - null, null, null, null ENSOCUP000000159... - pep:novel chromosome:oryCun2:6:9242441:9246952:1 gene:ENSOCUG00000000179 transcript:ENSOCUT000000001...	2.0E-53	[1..130]	[1..130]
gi\|76780132, gi\|... - gi\|76780132\|gb\|AAI06350.1\| MGC130892 protein [Xenopus laevis], gi\|67677960\|gb\|AAH97585.1\| MGC114789 ... gi\|542157969\|ref... - PREDICTED: 40S ribosomal protein S15a [Zonotrichia albicollis] gi\|18000277 - gi\|18000277\|gb\|AAL54900.1\|AF159546_1 ribosomal protein S15 isoform [Lapemis hardwickii] gi\|118098060, gi... - gi\|118098060\|ref\|XP_425249.2\| PREDICTED: similar to ribosomal protein S15 isoform 2 [Gallus gallus],... gi\|156717896, gi... - gi\|156717896\|ref\|NP_001096489.1\| hypothetical protein LOC100125111 [Xenopus (Silurana) tropicalis], ...	3.0E-53	[1..130]	[1..130]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-53	[1..130]	[1..130]
gi\|7340072 - gi\|7340072\|gb\|AAF61072.1\|AF220553_1 40S ribosomal protein S15A [Paralichthys olivaceus] gi\|124300817 - gi\|124300817\|dbj\|BAF45904.1\| ribosomal protein S15a [Solea senegalensis] gi\|32454278 - gi\|32454278\|gb\|AAP82938.1\| 40S ribosomal protein S15A [Hippocampus comes]	1.0E-52	[1..130]	[1..130]
gi\|54643848, gi\|... - gi\|54643848\|gb\|EAL32591.1\| GA15195 [Drosophila pseudoobscura pseudoobscura], gi\|125983534\|ref\|XP_001... gi\|125983534\|ref... - GA15195-PA [Drosophila pseudoobscura], GA15195 [Drosophila pseudoobscura pseudoobscura] RS15A_DROYA - 40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3 RpS15Aa-PC, RpS1... - The gene Ribosomal protein S15Aa is referred to in FlyBase by the symbol Dmel\RpS15Aa (CG2033, FBgn0... gi\|195059055, gi... - gi\|195059055\|ref\|XP_001995555.1\| GH17815 [Drosophila grimshawi], gi\|193896341\|gb\|EDV95207.1\| GH17815... gi\|195133640, gi... - gi\|195133640\|ref\|XP_002011247.1\| GI16425 [Drosophila mojavensis], gi\|193907222\|gb\|EDW06089.1\| GI1642... gi\|194108633, gi... - gi\|195168739\|ref\|XP_002025188.1\| GL26726 [Drosophila persimilis], gi\|194108633\|gb\|EDW30676.1\| GL2672... gi\|195352846, gi... - gi\|195352846\|ref\|XP_002042922.1\| GM11496 [Drosophila sechellia], gi\|194126969\|gb\|EDW49012.1\| GM11496... gi\|195398721, gi... - gi\|195398721\|ref\|XP_002057969.1\| GJ15828 [Drosophila virilis], gi\|194150393\|gb\|EDW66077.1\| GJ15828 [... gi\|195456726, gi... - gi\|195456726\|ref\|XP_002075260.1\| GK16027 [Drosophila willistoni], gi\|194171345\|gb\|EDW86246.1\| GK1602... gi\|194204241, gi... - gi\|195566562\|ref\|XP_002106849.1\| GD15889 [Drosophila simulans], gi\|194204241\|gb\|EDX17817.1\| GD15889 ... gi\|220960446, gi... - gi\|220960446\|gb\|ACL92759.1\| RpS15Aa-PA [synthetic construct], gi\|220948968\|gb\|ACL87027.1\| RpS15Aa-PA... gi\|194768000, gi... - gi\|194768000\|ref\|XP_001966102.1\| GF19502 [Drosophila ananassae], gi\|190622987\|gb\|EDV38511.1\| GF19502... gi\|190649932, gi... - gi\|194895562\|ref\|XP_001978283.1\| GG19508 [Drosophila erecta], gi\|190649932\|gb\|EDV47210.1\| GG19508 [D...	1.0E-51	[1..130]	[1..130]
gi\|15294043 - gi\|15294043\|gb\|AAK95198.1\|AF402824_1 40S ribosomal protein S15a [Ictalurus punctatus]	3.0E-51	[4..130]	[1..127]
RS15A_STRPU - 40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3	4.0E-50	[1..130]	[1..130]
gi\|15213820 - gi\|15213820\|gb\|AAK92185.1\|AF400213_1 ribosomal protein S15A [Spodoptera frugiperda]	5.0E-49	[1..130]	[1..129]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSSVLADA LNAINNAEKT GKRQVLLRPS SKVIIKFLQV MQKHGYIGEF EYIDDHRSGK  60
   61 IVVQLNGRLN KCGVISPRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	720.70927
Match:	1k5xH_
Description:	No description for 1k5xH_ was found.

Predicted Domain #2

Region A:
Residues: [80-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVKIGDIEKW TANLLPARQF GYVILTTSAG IMDHEEARRK HVSGKILGFV Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	720.70927
Match:	1k5xH_
Description:	No description for 1k5xH_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits