| Protein: | SEC61 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 480 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC61.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [2..469] | [3..470] |
|
|
0.0 | [3..466] | [2..465] |
|
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0.0 | [4..466] | [3..465] |
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0.0 | [3..466] | [2..465] |
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0.0 | [3..466] | [2..465] |
|
|
0.0 | [4..466] | [3..465] |
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0.0 | [4..466] | [3..465] |
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0.0 | [3..467] | [2..463] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MSSNRVLDLF KPFESFLPEV IAPERKVPYN QKLIWTGVSL LIFLILGQIP LYGIVSSETS 60
61 DPLYWLRAML AS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.530 | 0.256 | integral to endoplasmic reticulum membrane | a.3.1 | Cytochrome c |
| View | Download | 0.533 | 0.034 | integral to endoplasmic reticulum membrane | a.28.1 | ACP-like |
| View | Download | 0.535 | 0.011 | integral to endoplasmic reticulum membrane | d.45.1 | ClpS-like |
| View | Download | 0.400 | 0.006 | integral to endoplasmic reticulum membrane | a.134.1 | Fungal elicitin |
| View | Download | 0.721 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.377 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.357 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.349 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.346 | N/A | N/A | a.161.1 | beta-catenin-interacting protein ICAT |
| View | Download | 0.343 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.341 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.332 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.324 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.318 | N/A | N/A | d.94.1 | HPr-like |
| View | Download | 0.311 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.309 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.307 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.302 | N/A | N/A | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.287 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.281 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.263 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.260 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.258 | N/A | N/A | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.247 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.246 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.244 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.242 | N/A | N/A | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.236 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.220 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.218 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.218 | N/A | N/A | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.218 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| Term | Confidence | Notes |
| ribonucleoprotein binding | 5.96221631042313 | bayes_pls_golite062009 |
| protein transporter activity | 5.55929343005534 | bayes_pls_golite062009 |
| transporter activity | 3.32223562584466 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.22714325269757 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.12732472524264 | bayes_pls_golite062009 |
| macromolecule transmembrane transporter activity | 2.12732472524264 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.76187269823414 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.67782980643723 | bayes_pls_golite062009 |
| binding | 1.4562802789412 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.42890247609405 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 1.15847548838424 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 1.15316743403707 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.10003802565492 | bayes_pls_golite062009 |
| peptide transporter activity | 1.01893828721893 | bayes_pls_golite062009 |
| protein binding | 0.674651002700028 | bayes_pls_golite062009 |
|
Region A: Residues: [73-480] |
1 11 21 31 41 51
| | | | | |
1 NRGTLLELGV SPIITSSMIF QFLQGTQLLQ IRPESKQDRE LFQIAQKVCA IILILGQALV 60
61 VVMTGNYGAP SDLGLPICLL LIFQLMFASL IVMLLDELLS KGYGLGSGIS LFTATNIAEQ 120
121 IFWRAFAPTT VNSGRGKEFE GAVIAFFHLL AVRKDKKRAL VEAFYRTNLP NMFQVLMTVA 180
181 IFLFVLYLQG FRYELPIRST KVRGQIGIYP IKLFYTSNTP IMLQSALTSN IFLISQILFQ 240
241 KYPTNPLIRL IGVWGIRPGT QGPQMALSGL AYYIQPLMSL SEALLDPIKT IVYITFVLGS 300
301 CAVFSKTWIE ISGTSPRDIA KQFKDQGMVI NGKRETSIYR ELKKIIPTAA AFGGATIGAL 360
361 SVGSDLLGTL GSGASILMAT TTIYGYYEAA AKEGGFTKNL VPGFSDLM
|
| Detection Method: | |
| Confidence: | 12.017729 |
| Match: | PF00344 |
| Description: | eubacterial secY protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
