Protein: | YRF1-4 |
Organism: | Saccharomyces cerevisiae |
Length: | 1382 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRF1-4.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [159..1382] | [1..1224] |
|
0.0 | [15..1382] | [315..1681] |
Region A: Residues: [1-93] |
1 11 21 31 41 51 | | | | | | 1 MWKTLGRVEQ LLPYASLILR NREVLFREPK RGIDEYLEND SFFQMIPVKY REIVLPKLRR 60 61 DTNKMTAALK NKVAVAIDEL TVPLMWMIHF AVG |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [94-173] |
1 11 21 31 41 51 | | | | | | 1 YPYRYPELQL LAFAGPQRNV YVDDTTRRIQ LYTDYNKNGS SEPRLKTLDG LTSDYVFYFV 60 61 TVLRQMQICA LGNSYDAFNH |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
binding | 0.36550713198424 | bayes_pls_golite062009 |
catalytic activity | 0.234613562021476 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 0.166100211611062 | bayes_pls_golite062009 |
pyrophosphatase activity | 0.159702441149605 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.149170905385965 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.147838751017739 | bayes_pls_golite062009 |
hydrolase activity | 0.0436758932827116 | bayes_pls_golite062009 |
Region A: Residues: [174-314] |
1 11 21 31 41 51 | | | | | | 1 DPWMDVVGFE DPDQVTNRDI SRIVLYSYMF LNTAKGCLVE YATFRQYMRE LPKNAPQKLN 60 61 FREMRQGLIA LGRHCVGSRF ETDLYESATS ELMANHSVQT GRNIYGVDSF SLTSVSGTTA 120 121 TLLQERASER WIQWLGLESD Y |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [315-778] |
1 11 21 31 41 51 | | | | | | 1 HCSFSSTRNA EDVVAGEAAS SDHHQKISRV TRKRPREPKS TNDILVAGRK LFGSSFEFRD 60 61 LHQLRLCHEI YMADTPSVAV QAPPGYGKTE LFHLPLIALA SKGDVKYVSF LFVPYTVLLA 120 121 NCMIRLSRCG CLNVAPVRNF IEEGCDGVTD LYVGIYDDLA STNFTDRIAA WENIVECTFR 180 181 TNNVKLGYLI VDEFHNFETE VYRQSQFGGI TNLDFDAFEK AIFLSGTAPE AVADAALQRI 240 241 GLTGLAKKSM DINELKRSED LSRGLSSYPT RMFNLIKEKS EVPLGHVHKI WKKVESQPEE 300 301 ALKLLLALFE IEPESKAIVV ASTTNEVEEL ACSWRKYFRV VWIHGKLGAA EKVSRTKEFV 360 361 TDGSMRVLIG TKLVTEGIDI KQLMMVIMLD NRLNIIELIQ GVGRLRDGGL CYLLSRKNSW 420 421 AARNRKGELP PIKEGCITEQ VREFYGLESK KGKKGQHVGC CGSR |
Detection Method: | |
Confidence: | 168.0 |
Match: | 1fuuA_ |
Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [779-1007] |
1 11 21 31 41 51 | | | | | | 1 TDLSADTVEL IERMDRLAEK QATASMSIIA LPSSFQESNS SDRCRKYCSS DEDSDTCIHG 60 61 SANASTNATT NSSTNATTTA STNVRTSATT TASINVRTSA ITTESTNSST NATTTASTNV 120 121 RTSATTTASI NVRTSATTTE STNSNTSATT TESTDSNTSA TTTESTDSNT SATTTASTNS 180 181 STNATTTAST NSSTNATTTE STNASAKEDA NKDGNAEDNR FHPVTDINK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1008-1382] |
1 11 21 31 41 51 | | | | | | 1 ESYKRKGSQM VLLERKKLKA QFPNTSENMN VLQFLGFRSD EIKHLFLYGI DVYFCPEGVF 60 61 TQYGLCKGCQ KMFELCVCWA GQKVSYRRMA WEALAVERML RNDEEYKEYL EDIEPYHGDP 120 121 VGYLKYFSVK RGEIYSQIQR NYAWYLAITR RRETISVLDS TRGKQGSQVF RMSGRQIKEL 180 181 YYKVWSNLRE SKTEVLQYFL NWDEKKCREE WEAKDDTVFV EALEKVGVFQ RLRSMTSAGL 240 241 QGPQYVKLQF SRHHRQLRSR YELSLGMHLR DQLALGVTPS KVPHWTAFLS MLIGLFYNKT 300 301 FRQKLEYLLE QISEVWLLPH WLDLANVEVL AADNTRVPLY MLMVAVHKEL DSDDVPDGRF 360 361 DIILLCRDSS REVGE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.