| Protein: | HMG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1054 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMG1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1054] | [1..1054] |
|
|
0.0 | [188..1030] | [60..875] |
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0.0 | [188..1030] | [60..875] |
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0.0 | [188..1030] | [60..875] |
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0.0 | [188..1030] | [60..876] |
|
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0.0 | [188..1030] | [60..876] |
|
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0.0 | [78..1027] | [3..931] |
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0.0 | [188..1030] | [60..871] |
|
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0.0 | [462..1035] | [41..604] |
|
Region A: Residues: [1-524] |
1 11 21 31 41 51
| | | | | |
1 MPPLFKGLKQ MAKPIAYVSR FSAKRPIHII LFSLIISAFA YLSVIQYYFN GWQLDSNSVF 60
61 ETAPNKDSNT LFQECSHYYR DSSLDGWVSI TAHEASELPA PHHYYLLNLN FNSPNETDSI 120
121 PELANTVFEK DNTKYILQED LSVSKEISST DGTKWRLRSD RKSLFDVKTL AYSLYDVFSE 180
181 NVTQADPFDV LIMVTAYLMM FYTIFGLFND MRKTGSNFWL SASTVVNSAS SLFLALYVTQ 240
241 CILGKEVSAL TLFEGLPFIV VVVGFKHKIK IAQYALEKFE RVGLSKRITT DEIVFESVSE 300
301 EGGRLIQDHL LCIFAFIGCS MYAHQLKTLT NFCILSAFIL IFELILTPTF YSAILALRLE 360
361 MNVIHRSTII KQTLEEDGVV PSTARIISKA EKKSVSSFLN LSVVVIIMKL SVILLFVFIN 420
421 FYNFGANWVN DAFNSLYFDK ERVSLPDFIT SNASENFKEQ AIVSVTPLLY YKPIKSYQRI 480
481 EDMVLLLLRN VSVAIRDRFV SKLVLSALVC SAVINVYLLN AARI
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [525-577] |
1 11 21 31 41 51
| | | | | |
1 HTSYTADQLV KTEVTKKSFT APVQKASTPV LTNKTVISGS KVKSLSSAQS SSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.397 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.297 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.421 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.284 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.269 | a.5.2 | UBA-like |
|
Region A: Residues: [578-689] |
1 11 21 31 41 51
| | | | | |
1 GPSSSSEEDD SRDIESLDKK IRPLEELEAL LSSGNTKQLK NKEVAALVIH GKLPLYALEK 60
61 KLGDTTRAVA VRRKALSILA EAPVLASDRL PYKNYDYDRV FGACCENVIG YM
|
| Detection Method: | |
| Confidence: | 2420.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [690-743] |
1 11 21 31 41 51
| | | | | |
1 PLPVGVIGPL VIDGTSYHIP MATTEGCLVA SAMRGCKAIN AGGGATTVLT KDGM
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Region B: Residues: [846-1054] |
1 11 21 31 41 51
| | | | | |
1 TDKKPAAINW IEGRGKSVVA EATIPGDVVR KVLKSDVSAL VELNIAKNLV GSAMAGSVGG 60
61 FNAHAANLVT AVFLALGQDP AQNVESSNCI TLMKEVDGDL RISVSMPSIE VGTIGGGTVL 120
121 EPQGAMLDLL GVRGPHATAP GTNARQLARI VACAVLAGEL SLCAALAAGH LVQSHMTHNR 180
181 KPAEPTKPNN LDATDINRLK DGSVTCIKS
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| Detection Method: | |
| Confidence: | 2420.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [744-845] |
1 11 21 31 41 51
| | | | | |
1 TRGPVVRFPT LKRSGACKIW LDSEEGQNAI KKAFNSTSRF ARLQHIQTCL AGDLLFMRFR 60
61 TTTGDAMGMN MISKGVEYSL KQMVEEYGWE DMEVVSVSGN YC
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| Detection Method: | |
| Confidence: | 2420.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
| Matching Structure (courtesy of the PDB): |
|
