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View Structure Prediction Details

Protein: CUE4
Organism: Saccharomyces cerevisiae
Length: 117 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUE4.

Description E-value Query
Range
Subject
Range
gi|151946062 - gi|151946062|gb|EDN64293.1| coupling of ubiquitin conjugation to ER degradation [Saccharomyces cerev...
gi|190408145 - gi|190408145|gb|EDV11410.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
CUE4_YEAST - CUE domain-containing protein CUE4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUE4 ...
CUE4 - Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecu...
3.0E-61 [1..117] [1..117]
SPCC4G3.13c - CUE domain protein Cue1 /4 family
CUE4_SCHPO - CUE domain-containing protein 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
0.004 [52..115] [26..89]

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Predicted Domain #1
Region A:
Residues: [1-53]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSTIVFIL TMVCLFVYTV KHRGAKQVPS RTVQDAKPAP SVATNDPSPE PVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [54-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPEERVARL NRHGSDRKRA VNSDMVEIVM TMAPHVPQEK VVQDLRNTGS IEHTMENIFA  60
   61 GKLD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 13.408935
Match: PF02845
Description: CUE domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle