| Protein: | VBA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 562 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VBA1.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-85 | [16..562] | [12..525] |
|
|
6.0E-79 | [33..477] | [4..418] |
|
|
6.0E-78 | [7..556] | [18..530] |
|
|
2.0E-75 | [32..554] | [9..501] |
|
|
3.0E-75 | [32..554] | [9..501] |
|
|
1.0E-74 | [34..561] | [137..632] |
|
|
2.0E-74 | [32..554] | [8..500] |
|
|
5.0E-74 | [5..561] | [2..543] |
|
|
3.0E-73 | [5..553] | [14..552] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MQTLDETSNL LPPPEEAEAP PLEQKFHEYN LALPKFPILF SLWLGSFLSS LDSTIVANIM 60
61 NRVAEEFSES SKKQWIATSF LLTNTAFQPL YGKLSDITGR KSALLTAQFF FGLGCLLTCF 120
121 ARNVTEFSIA RAICGIGAGG LNAISSIAVS DICTARERGV YQGYANIVFG FGQLLGAPLG 180
181 GVFIETIGWR ALFGIQVPVI MLCSVLAIKN IN
|
|
Region B: Residues: [276-423] |
1 11 21 31 41 51
| | | | | |
1 ERYYATEKIL PFELLTRSFC LSSAVTVISS FVVFGEIFRS PIYLQLLQNI SVTKTGLFLI 60
61 FPSISVAVGS LVTGWVLRNT KINLAHCAYQ IIFGGMIMQL LGLGLGYFLL SHLNPDYTIY 120
121 DMLESITFRS NSIWWKLIYV FASVLVSF
|
| Detection Method: |  |
| Confidence: | 7.522879 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
|
Region A: Residues: [213-275] |
1 11 21 31 41 51
| | | | | |
1 IKLFHVPPMK ERYTLKNLSR IDIFGSLSLV ATISGVLFLC SSQLNKLYLA LFTIGSFIVF 60
61 ILV
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
|
Region A: Residues: [424-562] |
1 11 21 31 41 51
| | | | | |
1 GYACLLVATL VSIVFTVEKS QQGTMTGVFY LWRSIGNVLG ASLTLVSYEN SLSSMLWNYM 60
61 FKTKRDDEYH FTKKQYYSLI NDSSYLRGPN FPTDIFVRIL DVYKKAFLIS YIPNIALAAV 120
121 GIVLSLYLVK HTYKRSSSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.467 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.384 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.366 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.356 | N/A | N/A | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.336 | N/A | N/A | c.23.13 | Type II 3-dehydroquinate dehydratase |
| View | Download | 0.317 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.293 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.284 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.283 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.282 | N/A | N/A | d.162.1 | LDH C-terminal domain-like |
| View | Download | 0.261 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.253 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.251 | N/A | N/A | d.163.1 | DNA breaking-rejoining enzymes |
| View | Download | 0.248 | N/A | N/A | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.245 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.231 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.230 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.214 | N/A | N/A | c.80.1 | SIS domain |
| View | Download | 0.207 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.207 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.204 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
