| Protein: | AIP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 615 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..614] | [894..1483] |
|
|
0.0 | [10..509] | [823..1314] |
|
Region A: Residues: [1-247] |
1 11 21 31 41 51
| | | | | |
1 MSSISLKEII PPQPSTQRNF TTHLSYDPTT NAIAYPCGKS AFVRCLDDGD SKVPPVVQFT 60
61 GHGSSVVTTV KFSPIKGSQY LCSGDESGKV IVWGWTFDKE SNSVEVNVKS EFQVLAGPIS 120
121 DISWDFEGRR LCVVGEGRDN FGVFISWDSG NSLGEVSGHS QRINACHLKQ SRPMRSMTVG 180
181 DDGSVVFYQG PPFKFSASDR THHKQGSFVR DVEFSPDSGE FVITVGSDRK ISCFDGKSGE 240
241 FLKYIED
|
| Detection Method: |  |
| Confidence: | 105.519517 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| binding | 2.22722319261713 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 1.24520283111044 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.22384651674093 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K4 specific) | 1.14494479608652 | bayes_pls_golite062009 |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| tubulin binding | 0.968047176592527 | bayes_pls_golite062009 |
| 0.92526678064403 | bayes_pls_golite062009 | |
| microtubule binding | 0.834073483714259 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| nucleic acid binding | 0.438994634856101 | bayes_pls_golite062009 |
| dynein binding | 0.41765917405931 | bayes_pls_golite062009 |
| transcription regulator activity | 0.415449383711249 | bayes_pls_golite062009 |
| snoRNA binding | 0.347797037104681 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| myosin II binding | 0.0145748031956598 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [248-366] |
1 11 21 31 41 51
| | | | | |
1 DQEPVQGGIF ALSWLDSQKF ATVGADATIR VWDVTTSKCV QKWTLDKQQL GNQQVGVVAT 60
61 GNGRIISLSL DGTLNFYELG HDEVLKTISG HNKGITALTV NPLISGSYDG RIMEWSSSS
|
| Detection Method: | |
| Confidence: | 12.32 |
| Match: | 1jjuB |
| Description: | Quinohemoprotein amine dehydrogenase B chain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [367-433] |
1 11 21 31 41 51
| | | | | |
1 MHQDHSNLIV SLDNSKAQEY SSISWDDTLK VNGITKHEFG SQPKVASANN DGFTAVLTND 60
61 DDLLILQ
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1gxrA_ |
| Description: | Groucho/tle1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [434-508] |
1 11 21 31 41 51
| | | | | |
1 SFTGDIIKSV RLNSPGSAVS LSQNYVAVGL EEGNTIQVFK LSDLEVSFDL KTPLRAKPSY 60
61 ISISPSETYI AAGDV
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [509-615] |
1 11 21 31 41 51
| | | | | |
1 MGKILLYDLQ SREVKTSRWA FHTSKINAIS WKPAEKGANE EEIEEDLVAT GSLDTNIFIY 60
61 SVKRPMKIIK ALNAHKDGVN NLLWETPSTL VSSGADACIK RWNVVLE
|
| Detection Method: | |
| Confidence: | 14.77 |
| Match: | 1k8kC |
| Description: | Arp2/3 complex 41 kDa subunit ARPC1 |
Matching Structure (courtesy of the PDB): |
|
